PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g027468m
Common NameCISIN_1g027468mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family HD-ZIP
Protein Properties Length: 224aa    MW: 25881.8 Da    PI: 5.0945
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g027468mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox55.78.5e-183991456
                       -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
           Homeobox  4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                       +++f++eq++ Le +Fe++  p  +++ ++A++lgL+ rqV +WFqN+Ra+ k
  orange1.1g027468m 39 KRRFSDEQVKSLEFMFESEARPESRMKHRMADELGLQPRQVAIWFQNKRARSK 91
                       568************************************************99 PP
2HD-ZIP_I/II102.92.7e-3338129293
        HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                        +krr+s+eqvk+LE +Fe+e + e++ K+++a eLglqprqva+WFqn+RAR ktkq+E++y++Lk+++++l+++ e +++e++ L  +l++
  orange1.1g027468m  38 NKRRFSDEQVKSLEFMFESEARPESRMKHRMADELGLQPRQVAIWFQNKRARSKTKQIEREYTKLKAEFETLASSYELMRREHQLLLVQLQK 129
                        79***********************************************************************************9999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.52E-163095IPR009057Homeodomain-like
PROSITE profilePS5007116.1633393IPR001356Homeobox domain
SMARTSM003897.2E-143697IPR001356Homeobox domain
CDDcd000861.38E-123994No hitNo description
Gene3DG3DSA:1.10.10.601.8E-163991IPR009057Homeodomain-like
PfamPF000464.4E-153991IPR001356Homeobox domain
PROSITE patternPS0002706891IPR017970Homeobox, conserved site
PfamPF021831.2E-1093134IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 224 aa     Download sequence    Send to blast
MNSEIPETTA AAAVKFRGLN LDWTDMQQPI ASFGTGNNKR RFSDEQVKSL EFMFESEARP  60
ESRMKHRMAD ELGLQPRQVA IWFQNKRARS KTKQIEREYT KLKAEFETLA SSYELMRREH  120
QLLLVQLQKL KNLLGKGHED TNENSGDRKS ENEITTESNE RPSQIYVPSS DDRSRNIEST  180
VIMKDFAATN VEEQTESSGN WCKFESGFLD ETSSTLPWWE LWS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006476287.11e-164homeobox-leucine zipper protein ATHB-12-like isoform X2
TrEMBLA0A067GMV81e-164A0A067GMV8_CITSI; Uncharacterized protein
STRINGXP_006476286.11e-161(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1805779
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46680.25e-31homeobox 7