PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g027547m
Common NameCISIN_1g027547mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family bHLH
Protein Properties Length: 223aa    MW: 25147.7 Da    PI: 6.0555
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g027547mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.88e-133077655
                       HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-.STCHHHHHHHHHHHHHHH CS
                HLH  6 nerErrRRdriNsafeeLrellPkaskapskK.lsKaeiLekAveYIksLq 55
                       + +E++RRd++++ +++L++llP++   psk  ls  + + +A++YIk+L+
  orange1.1g027547m 30 KTIEKNRRDQMKNLYSTLKSLLPNQ---PSKEeLSLPDQVDEAINYIKMLE 77
                       689*********************7...55555***************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.23E-132395IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088813.1922476IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.4E-112895IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.3E-53082IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.1E-93077IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.62E-83281No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    Send to blast
MGYLGQSLEA KGSMKRKQCS SSSPTKIERK TIEKNRRDQM KNLYSTLKSL LPNQPSKEEL  60
SLPDQVDEAI NYIKMLETKL KECKKRKESL QGRERSHACI SDGTEARLMT SSSPKAPEIE  120
IHEMGSNLEV ILTSGVDDQF IFYEVIRILH QDGAEILNAK FSVVGNTIFH VIHAEIRDSM  180
FGFGAAKISE RLKGFVSGCA SEGEMQLPEL WDFEINPELW EF*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13238EKNRRDQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Csi.73030.0fruit| leaf| stem
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006447292.11e-163transcription factor bHLH162
RefseqXP_006469875.21e-163transcription factor bHLH162-like
TrEMBLA0A067ERQ31e-164A0A067ERQ3_CITSI; Uncharacterized protein
STRINGXP_006469875.11e-162(Citrus sinensis)
STRINGXP_006447292.11e-162(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM12782592
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20970.13e-38bHLH family protein