PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g027549m
Common NameCISIN_1g027549mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family C2H2
Protein Properties Length: 223aa    MW: 23990.3 Da    PI: 9.9117
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g027549mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.10.000292042123
                       EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                       ++C +C ksF ++ +L+ H+r+H
  orange1.1g027549m 20 FSCIYCRKSFANHRSLRGHLRSH 42
                       7888******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.603.7E-51643IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576676.86E-51743No hitNo description
PROSITE profilePS5015710.7832047IPR007087Zinc finger, C2H2
PfamPF121712.4E-52042IPR022755Zinc finger, double-stranded RNA binding
SMARTSM003550.00462042IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002802242IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    Send to blast
MANLPSAADG ENLEKGTSAF SCIYCRKSFA NHRSLRGHLR SHNVQLKAAW RRNCPSNSCA  60
SIGSASTIVD PLSSNQPGNS CEVVGNNLAF HKRSSPNLTF SMNATFAGSG STPSAGFPLD  120
VSLSLGLNGV QKLRNDEIQT CQDGLAEGCV SKMVGFLNFG QGERIYPIDS LANIDVMKIS  180
KRAKIVPRWP VEIQKPQIKE SSLVKTMEKP GPALLNRRSQ QI*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006467456.11e-163uncharacterized protein LOC102611034 isoform X2
TrEMBLA0A067GEU71e-163A0A067GEU7_CITSI; Uncharacterized protein
STRINGXP_006467455.11e-158(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2064422