PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g027756m
Common NameCISIN_1g022728mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family GATA
Protein Properties Length: 220aa    MW: 24246.6 Da    PI: 10.743
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g027756mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA51.71.2e-16141177135
               GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                        C++Cg ++  Tp++Rrgp+g++tLCnaCGl+++ kg+
  orange1.1g027756m 141 CRHCGISEksTPMMRRGPEGPRTLCNACGLMWANKGT 177
                        *****99999************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009796.7E-111045IPR010399Tify domain
PROSITE profilePS5132014.2171045IPR010399Tify domain
PfamPF062001.5E-121644IPR010399Tify domain
PROSITE profilePS5101713.10665107IPR010402CCT domain
PfamPF062039.9E-1665107IPR010402CCT domain
SMARTSM004012.7E-14135188IPR000679Zinc finger, GATA-type
PROSITE profilePS501149.183135192IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.57E-13136198No hitNo description
Gene3DG3DSA:3.30.50.103.7E-16139182IPR013088Zinc finger, NHR/GATA-type
CDDcd002022.08E-14140183No hitNo description
PROSITE patternPS003440141168IPR000679Zinc finger, GATA-type
PfamPF003201.2E-14141177IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 220 aa     Download sequence    Send to blast
MMSMMRVMVL ERIGDQLTLS FQGQVYVFDS VSPEKVQAVL LLLGGREVPS TTPAIPIANN  60
QNNRRLASLI RFREKRKERN FEKKIRYTVR KEVALRMQRN KGQFTSAKSN NEDSASAISS  120
WGSNQSWAGD VNGSQNQDIV CRHCGISEKS TPMMRRGPEG PRTLCNACGL MWANKGTLRD  180
LSKAAPQAGQ TSSLNKNEEN GTLKAEQVIR AVGNINGST*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Csi.54080.0fruit
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Predominantly expressed in shoot apices, inflorescences and roots. {ECO:0000269|PubMed:14966217}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00198DAPTransfer from AT1G51600Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006465169.11e-152GATA transcription factor 28 isoform X2
SwissprotQ8H1G01e-102GAT28_ARATH; GATA transcription factor 28
TrEMBLA0A067DIL31e-161A0A067DIL3_CITSI; Uncharacterized protein
STRINGXP_006465167.11e-147(Citrus sinensis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51600.21e-89ZIM-LIKE 2