PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g028004m
Common NameCISIN_1g028004mg, LOC102618475
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family ERF
Protein Properties Length: 216aa    MW: 22852.4 Da    PI: 4.6658
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g028004mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP252.99.1e-1754102255
                AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                         y+G+r  +++g+Wv+eIr+p++   ++r++lg++ t+e+Aa+a++ a+++l+g
  orange1.1g028004m  54 SYRGIR--SRSGKWVSEIREPRK---TTRIWLGTYPTPEMAAAAYDVAALALKG 102
                        79***6..678*********843...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008474.5E-1053102IPR001471AP2/ERF domain
CDDcd000185.52E-1653111No hitNo description
Gene3DG3DSA:3.30.730.103.0E-2654111IPR001471AP2/ERF domain
SMARTSM003801.9E-2654116IPR001471AP2/ERF domain
SuperFamilySSF541712.16E-1754111IPR016177DNA-binding domain
PROSITE profilePS5103219.90254110IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 216 aa     Download sequence    Send to blast
MADPHQRDQQ PPVTEPPKLS KPSIQVPELE PAPAPAASSS SPSLSSPSKG RHPSYRGIRS  60
RSGKWVSEIR EPRKTTRIWL GTYPTPEMAA AAYDVAALAL KGPETPLNFP NMIISYPIPA  120
STSASDIRAA AAQAAAARGS GSEPGPVQKE SKESEGTSSS TCMGQEFVDE YELLNMPNLL  180
VDMAEGMLVS PPRIDTPSSD DSAGNSAEES LWSYT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-13521111273Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006421847.11e-153ethylene-responsive transcription factor ERF027
RefseqXP_006490322.11e-153ethylene-responsive transcription factor ERF027
SwissprotQ9FJ901e-50ERF25_ARATH; Ethylene-responsive transcription factor ERF025
TrEMBLA0A067EY851e-152A0A067EY85_CITSI; Uncharacterized protein
TrEMBLA0A2H5NM381e-152A0A2H5NM38_CITUN; Uncharacterized protein
TrEMBLV4S4281e-152V4S428_9ROSI; Uncharacterized protein
STRINGXP_006490322.11e-153(Citrus sinensis)
STRINGXP_006421847.11e-153(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19572777
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52020.13e-38ERF family protein
Publications ? help Back to Top
  1. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]