PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

orange1.1g028041m

Common Name

CISIN_1g028041mg, LOC102622967

Organism

Citrus sinensis

Taxonomic ID

2711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

FAR1

Protein Properties

Length: 215aa MW: 24510.7 Da PI: 7.0247

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
orange1.1g028041m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	94.2	1.6e-29	53	141	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 fY+eYA+++GFs+r+ +s+ks+r+g+i++r++ C+keg++++++k+ + + r+r++ r gC+a++ vk+ek g+w+vtk+e+eHnH l orange1.1g028041m 53 FYDEYARRAGFSTRIISSRKSERDGSIISRHLACNKEGFNANRRKSGRVQIRKRESIREGCRAMILVKREKPGRWVVTKFEKEHNHLLL 141 9*******************************************99999*********************************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.2E-26	53	141	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 215 aa Download sequence Send to blast
MDLEAPAEET PAEEKTVITE SPTGGESDVC EIDTRREPYE GMVFESEDAA KIFYDEYARR 60 AGFSTRIISS RKSERDGSII SRHLACNKEG FNANRRKSGR VQIRKRESIR EGCRAMILVK 120 REKPGRWVVT KFEKEHNHLL LSSGKDGPSP DEKDRKIREL SMELHRANQK LEACQEQLQI 180 VMSYIEEHAK CLSKTVEEAV KDIQKVESGK QKEP*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Csi.11220	0.0	flower\| stem

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in hypocotyls, rosette and cauline leaves, inflorescences stems, flowers and siliques. {ECO:0000269\|PubMed:15591448}.

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006443020.1	1e-157	protein FAR1-RELATED SEQUENCE 5
Refseq	XP_006478710.1	1e-157	protein FAR1-RELATED SEQUENCE 5
Swissprot	Q9SZL8	1e-22	FRS5_ARATH; Protein FAR1-RELATED SEQUENCE 5
TrEMBL	A0A067DTX5	1e-155	A0A067DTX5_CITSI; Uncharacterized protein
TrEMBL	V4TX10	1e-155	V4TX10_9ROSI; Uncharacterized protein
STRING	XP_006478710.1	1e-156	(Citrus sinensis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM19294	7	7

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43280.1	2e-51	FAR1 family protein

Link Out ? help Back to Top
Phytozome	orange1.1g028041m
Entrez Gene	102622967

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]