PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g028526m
Common NameCISIN_1g022713mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family HD-ZIP
Protein Properties Length: 209aa    MW: 22944.6 Da    PI: 7.5766
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g028526mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.62.2e-18148200254
                        T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
           Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                        rk+ ++tkeq   Lee F+++++++ ++++ LA++l+L  rqV vWFqNrRa 
  orange1.1g028526m 148 RKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRAS 200
                        788899*********************************************95 PP
2HD-ZIP_I/II79.55.5e-26148201154
        HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARt 54 
                        +kk+rl+keq++lLEesF+++++L+p++K++lar+L+l+prqv+vWFqnrRA +
  orange1.1g028526m 148 RKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRASF 201
                        69**************************************************76 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.0E-17135198IPR009057Homeodomain-like
SuperFamilySSF466895.99E-17143200IPR009057Homeodomain-like
PROSITE profilePS5007115.872144204IPR001356Homeobox domain
SMARTSM003894.9E-13146208IPR001356Homeobox domain
PfamPF000468.0E-16148200IPR001356Homeobox domain
CDDcd000863.96E-16148199No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009735Biological Processresponse to cytokinin
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 209 aa     Download sequence    Send to blast
MGFDDGCNTG LVLGLGFASA IETTPTNKAN NINIVNHQQL QLPKGTCFEP SLSLGLPGEI  60
YPEAATATTK KNSNSIDVNK GYEESAAAGV AEYQILNRQA SPHSAVSNSF SSGRVVKRER  120
DLSSEEIEVE KVISSRASDE DEDGVNARKK LRLTKEQSAL LEESFKQHST LNPKQKQALA  180
RQLNLRPRQV EVWFQNRRAS FHFLQDKA*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Csi.820.0flower| fruit| leaf
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00477DAPTransfer from AT4G37790Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006426160.11e-144homeobox-leucine zipper protein HAT22
SwissprotP466042e-44HAT22_ARATH; Homeobox-leucine zipper protein HAT22
TrEMBLA0A067GGQ61e-152A0A067GGQ6_CITSI; Uncharacterized protein
STRINGXP_006426160.11e-143(Citrus clementina)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22800.11e-45HD-ZIP family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Liu T,Longhurst AD,Talavera-Rauh F,Hokin SA,Barton MK
    The Arabidopsis transcription factor ABIG1 relays ABA signaled growth inhibition and drought induced senescence.
    Elife, 2017.
    [PMID:27697148]
  3. Song L, et al.
    A transcription factor hierarchy defines an environmental stress response network.
    Science, 2017.
    [PMID:27811239]