PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

orange1.1g028625m

Common Name

CISIN_1g0269011mg

Organism

Citrus sinensis

Taxonomic ID

2711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

NF-YC

Protein Properties

Length: 207aa MW: 22103.6 Da PI: 4.7639

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
orange1.1g028625m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	60.3	4e-19	39	83	1	42
NF-YC 1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisae 42 ql++fw++q ie+a+dfknh+lPlarikki+kadedv+misae orange1.1g028625m 39 QLQMFWSYQrqeIEQANDFKNHQLPLARIKKIMKADEDVRMISAE 83 89***998899****************************98 PP
2	NF-YC	46.5	8.2e-15	82	118	66	102
NF-YC 66 aeenkrrtlkksdiaaavtrtdifdflvdivprdelk 102 aeenkrrtl+k+diaaa+trtdifdflvdivprde+k orange1.1g028625m 82 AEENKRRTLQKNDIAAAITRTDIFDFLVDIVPRDEIK 118 79********************************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47113	8.76E-19	27	108	IPR009072	Histone-fold
Gene3D	G3DSA:1.10.20.10	8.4E-13	53	82	IPR009072	Histone-fold
Pfam	PF00808	5.2E-5	61	83	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
Gene3D	G3DSA:1.10.20.10	1.9E-10	83	114	IPR009072	Histone-fold

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 207 aa Download sequence Send to blast
MENNQQGQSS SYPPQPPSAA AAATATAPFH HLIQQQQQQL QMFWSYQRQE IEQANDFKNH 60 QLPLARIKKI MKADEDVRMI SAEENKRRTL QKNDIAAAIT RTDIFDFLVD IVPRDEIKDE 120 AAGLGGMVGA TASGVPYYYP PMGQPTGTAG PGGMMIGRPA VDPTGVYVQP PSQAWQSVWQ 180 TPAGTGDDGS YGSGGSGGPA NLDGQG*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5g49_B	2e-33	47	114	3	95	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	86	92	RRTLQKN

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Csi.3802	0.0	callus\| flower\| fruit\| vegetative meristem

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Ubiquitous. Present in etiolated seedlings. {ECO:0000269\|PubMed:11250072, ECO:0000269\|PubMed:17322342, ECO:0000269\|PubMed:9662544}.

Functional Description ? help Back to Top
Source	Description
UniProt	Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006436849.1	1e-108	nuclear transcription factor Y subunit C-1
Refseq	XP_006493208.1	1e-108	nuclear transcription factor Y subunit C-1
Refseq	XP_024042168.1	1e-108	nuclear transcription factor Y subunit C-1
Swissprot	Q9SMP0	6e-91	NFYC1_ARATH; Nuclear transcription factor Y subunit C-1
TrEMBL	A0A067DWE4	1e-149	A0A067DWE4_CITSI; Uncharacterized protein
STRING	XP_006493208.1	1e-108	(Citrus sinensis)
STRING	XP_006436849.1	1e-108	(Citrus clementina)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G48590.1	2e-86	nuclear factor Y, subunit C1

Link Out ? help Back to Top
Phytozome	orange1.1g028625m

Publications ? help Back to Top
Shi H,Chan ZL AtHAP5A modulates freezing stress resistance in Arabidopsis independent of the CBF pathway. Plant Signal Behav, 2015. [PMID:24831307] Shi H,Chan ZL AtHAP5A modulates freezing stress resistance in Arabidopsis independent of the CBF pathway. Plant Signal Behav, 2014. 9(7): p. e29109 [PMID:25763489] Tang Y, et al. Arabidopsis NF-YCs Mediate the Light-Controlled Hypocotyl Elongation via Modulating Histone Acetylation. Mol Plant, 2017. 10(2): p. 260-273 [PMID:27876642] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]