PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g028655m
Common NameCISIN_1g028655mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family HD-ZIP
Protein Properties Length: 207aa    MW: 23226.4 Da    PI: 9.7349
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g028655mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.89.1e-1992145356
                        --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
           Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                        k++++t++q++ Le+ Fe ++++  e++ +LAk+lgL+ rqV +WFqNrRa+ +
  orange1.1g028655m  92 KKRRLTATQVQFLERNFEVENKLEPERKVQLAKELGLQPRQVAIWFQNRRARSR 145
                        56689***********************************************99 PP
2HD-ZIP_I/II118.53.7e-3892181291
        HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                        kkrrl++ qv++LE++Fe e+kLeperKv+la+eLglqprqva+WFqnrRAR ++++l kdy++Lk+ yd+lk++ ++L ke++ L++e+
  orange1.1g028655m  92 KKRRLTATQVQFLERNFEVENKLEPERKVQLAKELGLQPRQVAIWFQNRRARSRNQRLGKDYDSLKAVYDKLKDDYDNLLKEKQVLQNEV 181
                        9*************************************************************************************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466895.99E-1979147IPR009057Homeodomain-like
PROSITE profilePS5007117.287147IPR001356Homeobox domain
SMARTSM003894.4E-1790151IPR001356Homeobox domain
PfamPF000463.5E-1692145IPR001356Homeobox domain
CDDcd000863.70E-1692148No hitNo description
Gene3DG3DSA:1.10.10.602.1E-1994154IPR009057Homeodomain-like
PRINTSPR000312.5E-6118127IPR000047Helix-turn-helix motif
PROSITE patternPS000270122145IPR017970Homeobox, conserved site
PRINTSPR000312.5E-6127143IPR000047Helix-turn-helix motif
PfamPF021838.5E-11149181IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 207 aa     Download sequence    Send to blast
MKRKAMAACG NSVCGSQNVG TLLRNEKLPF YSELLDSFWL SKSPTSLQGP QSMAKFENVG  60
EGGAARASPF QSLDNEDNAY VDFDGWLGQS GKKRRLTATQ VQFLERNFEV ENKLEPERKV  120
QLAKELGLQP RQVAIWFQNR RARSRNQRLG KDYDSLKAVY DKLKDDYDNL LKEKQVLQNE  180
VVINLYATSL SSPLSITAAK AMISLI*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Csi.92841e-96fruit
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006438572.11e-126homeobox-leucine zipper protein HAT5 isoform X1
RefseqXP_006483248.11e-126homeobox-leucine zipper protein HAT5 isoform X1
TrEMBLA0A067GVN21e-150A0A067GVN2_CITSI; Uncharacterized protein
STRINGXP_006483248.11e-125(Citrus sinensis)
STRINGXP_006438572.11e-125(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM54528143
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01470.18e-30homeobox 1