PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

orange1.1g028717m

Common Name

CISIN_1g028717mg

Organism

Citrus sinensis

Taxonomic ID

2711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

FAR1

Protein Properties

Length: 206aa MW: 23841.4 Da PI: 10.2357

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
orange1.1g028717m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	97.4	1.6e-30	36	123	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 fY++YA+++GF +r+++ ++s r+g++++r++vC+keg+r+ + ++ +++r++ra+tr gCka+++vkkek+gkw+vt++++eHnH+l+ orange1.1g028717m 36 FYDAYATHMGFIMRVDAFRRSMRDGKVVWRRLVCNKEGFRKLRPRR-SENRKPRAVTREGCKAMIVVKKEKTGKWVVTRFVKEHNHPLV 123 9*****************************************99.9*************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.2E-28	36	123	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 206 aa Download sequence Send to blast
MMENVNDQEM AVTKGSSDGE PYLGMEFESE EAAKVFYDAY ATHMGFIMRV DAFRRSMRDG 60 KVVWRRLVCN KEGFRKLRPR RSENRKPRAV TREGCKAMIV VKKEKTGKWV VTRFVKEHNH 120 PLVAIPANGR RSVLLSQTPD EKDVKIRELT AELQRERKRS AAYQEQLEMV LRDMENHSHH 180 LSRNIDDIVQ SVKQIEAKRI AASHC*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Csi.6098	4e-38	callus\| flower

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in hypocotyls, rosette and cauline leaves, inflorescences stems, flowers and siliques. {ECO:0000269\|PubMed:15591448}.

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006447969.1	1e-151	protein FAR1-RELATED SEQUENCE 1
Refseq	XP_006492211.1	1e-151	protein FAR1-RELATED SEQUENCE 1
Swissprot	Q9SZL8	2e-29	FRS5_ARATH; Protein FAR1-RELATED SEQUENCE 5
TrEMBL	A0A067ETW4	1e-151	A0A067ETW4_CITSI; Uncharacterized protein
STRING	XP_006492211.1	1e-151	(Citrus sinensis)
STRING	XP_006447969.1	1e-151	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM13524	22	27

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G07500.1	3e-93	FAR1 family protein

Link Out ? help Back to Top
Phytozome	orange1.1g028717m

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]