PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

orange1.1g028727m

Common Name

CISIN_1g028727mg

Organism

Citrus sinensis

Taxonomic ID

2711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

NF-YC

Protein Properties

Length: 206aa MW: 22928.7 Da PI: 9.1034

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
orange1.1g028727m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	37.3	6e-12	105	187	17	99
NF-YC 17 knhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivprd 99 k ++P+ rik+i+k++ i+ ea l+ ka + f+ ++ ++ + + ++++l +aa+v++ ++dfl d vp++ orange1.1g028727m 105 KVCNFPMGRIKRIFKTQSSDIGITGEAVFLVNKATDKFLEQFCEDAYECCAKDRKKSLAYKHLAAVVSEQSKYDFLSDYVPEK 187 4679***********9999*********************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47113	1.21E-15	61	180	IPR009072	Histone-fold
Gene3D	G3DSA:1.10.20.10	1.1E-21	109	186	IPR009072	Histone-fold
Pfam	PF00808	2.6E-14	109	171	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 206 aa Download sequence Send to blast
MASSKKRKEE KAKLKNAETR KKAKPSPKKP KQSNKKTAIQ NGTVSESKDE VVVTPASSSI 60 NDSQQDSETE QEGRSQEQEA TNEKKKKPNK NGKKIERDDD DEVSKVCNFP MGRIKRIFKT 120 QSSDIGITGE AVFLVNKATD KFLEQFCEDA YECCAKDRKK SLAYKHLAAV VSEQSKYDFL 180 SDYVPEKIKA EDALAQRELA EGGEG*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	10	21	KAKLKNAETRKK
2	24	31	PSPKKPKQ

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Csi.10250	0.0	fruit\| stem

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006488121.1	1e-145	DNA polymerase epsilon subunit C isoform X1
TrEMBL	A0A067G0T9	1e-146	A0A067G0T9_CITSI; Uncharacterized protein
STRING	XP_006488121.1	1e-145	(Citrus sinensis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM11190	22	31

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07980.1	2e-30	nuclear factor Y, subunit C10

Link Out ? help Back to Top
Phytozome	orange1.1g028727m