PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g028751m
Common NameCISIN_1g028751mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family GRF
Protein Properties Length: 205aa    MW: 22206.2 Da    PI: 9.8884
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g028751mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC78.85.3e-2598142145
                WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                        daepgrCrRtDGKkWRCs+++++++k+CErH+hrgr rsrk +e+
  orange1.1g028751m  98 DAEPGRCRRTDGKKWRCSKEAIPDHKYCERHVHRGRLRSRKLVEA 142
                        79****************************************997 PP
2QLQ392.4e-142963337
                QLQ  3 FTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37
                       FT  Qlq+L  Q l++Ky+ a++PvP++L+ +i+k
  orange1.1g028751m 29 FTIFQLQELQLQSLILKYMEARLPVPSQLVIPIWK 63
                       7778*****************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009518.7E-42763IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166617.2342863IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088807.2E-92962IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166724.33598142IPR014977WRC domain
PfamPF088798.4E-2199141IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 205 aa     Download sequence    Send to blast
MESSKGDGSP SIALELELGT GCSKRSCGFT IFQLQELQLQ SLILKYMEAR LPVPSQLVIP  60
IWKSVASSVS GLSGDLHQLY PSFYGSGSLH LELKNGMDAE PGRCRRTDGK KWRCSKEAIP  120
DHKYCERHVH RGRLRSRKLV EASRRSPSTS SAITNANTNL SISLPAVNNS STAIATASNP  180
SPNFGFSPRS VLYDGGNKKL EPSL*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Csi.50010.0callus| vegetative meristem
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006477328.11e-148growth-regulating factor 10-like
TrEMBLA0A067F8Q41e-147A0A067F8Q4_CITSI; Uncharacterized protein
STRINGXP_006477328.11e-147(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16724712
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37740.11e-31growth-regulating factor 2