PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g028837m
Common NameCISIN_1g028727mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family NF-YC
Protein Properties Length: 204aa    MW: 22786.5 Da    PI: 9.1034
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g028837mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC28.33.8e-091051851799
              NF-YC  17 knhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivprd 99 
                        k  ++P+ rik+i+k++     i+ ea  l+ ka + f+ ++   ++  + + ++++l    +  +v++  ++dfl d vp++
  orange1.1g028837m 105 KVCNFPMGRIKRIFKTQSSDIGITGEAVFLVNKATDKFLEQFCEDAYECCAKDRKKSLAYKHL--VVSEQSKYDFLSDYVPEK 185
                        4679*************9999**************************9999999999988765..79999**********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471132.4E-1361168IPR009072Histone-fold
PfamPF008081.8E-13108167IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene3DG3DSA:1.10.20.103.5E-18109184IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 204 aa     Download sequence    Send to blast
MASSKKRKEE KAKLKNAETR KKAKPSPKKP KQSNKKTAIQ NGTVSESKDE VVVTPASSSI  60
NDSQQDSETE QEGRSQEQEA TNEKKKKPNK NGKKIERDDD DEVSKVCNFP MGRIKRIFKT  120
QSSDIGITGE AVFLVNKATD KFLEQFCEDA YECCAKDRKK SLAYKHLVVS EQSKYDFLSD  180
YVPEKIKAED ALAQRELAEG GEG*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11021KAKLKNAETRKK
22431PSPKKPKQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Csi.102500.0fruit| stem
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006488122.11e-119uncharacterized protein LOC102609428 isoform X2
TrEMBLA0A067GCM31e-144A0A067GCM3_CITSI; Uncharacterized protein
STRINGXP_006488121.11e-118(Citrus sinensis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07980.13e-28nuclear factor Y, subunit C10