PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

orange1.1g028946m

Common Name

CISIN_1g019764mg

Organism

Citrus sinensis

Taxonomic ID

2711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

NF-YA

Protein Properties

Length: 202aa MW: 22215.9 Da PI: 10.6228

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
orange1.1g028946m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	52.4	1.7e-16	14	52	1	40
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylh 40 +ep+YVNaKQy++Il+RRq+Rak+e ekk+ +k+rk h orange1.1g028946m 14 EEPVYVNAKQYRGILRRRQSRAKAELEKKV-IKARKVTFH 52 69****************************.999998877 PP
2	CBFB_NFYA	43.8	8.4e-14	77	99	36	58
CBFB_NFYA 36 kpylheSRhkhAlrRpRgsgGrF 58 +pylheSRh+hA+rR+Rg+gGrF orange1.1g028946m 77 QPYLHESRHQHAMRRARGCGGRF 99 8*********************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00521	8.9E-27	12	102	IPR001289	Nuclear transcription factor Y subunit A
PROSITE profile	PS51152	31.827	13	102	IPR001289	Nuclear transcription factor Y subunit A
Pfam	PF02045	3.5E-27	15	99	IPR001289	Nuclear transcription factor Y subunit A
PROSITE pattern	PS00686	0	18	38	IPR018362	CCAAT-binding factor, conserved site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0016602	Cellular Component	CCAAT-binding factor complex
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 202 aa Download sequence Send to blast
MHQARMPLPL EMEEEPVYVN AKQYRGILRR RQSRAKAELE KKVIKARKVT FHSLKGATIF 60 YNKTLQGLDT YALFSLQPYL HESRHQHAMR RARGCGGRFL NTKKLNDNAA NSAEKGMNSG 120 ADSSKGSTNG TGSVDSSIVQ QERAMEENAH MEHTSSNSNS NNRSLLSMYN TSSGSVEGNF 180 LGQQRGSMQG NGAPRGALPV K*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Csi.7188	0.0	callus\| fruit

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in inflorescence, stems, flowers and siliques. {ECO:0000269\|PubMed:11867211}.

Functional Description ? help Back to Top
Source	Description
UniProt	Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015039	4e-35	AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006439109.1	1e-103	nuclear transcription factor Y subunit A-4
Refseq	XP_006482871.1	1e-103	nuclear transcription factor Y subunit A-4-like
Swissprot	Q945M9	2e-29	NFYA9_ARATH; Nuclear transcription factor Y subunit A-9
TrEMBL	A0A067GXL1	1e-147	A0A067GXL1_CITSI; Uncharacterized protein
TrEMBL	A0A067H767	1e-145	A0A067H767_CITSI; Uncharacterized protein
STRING	XP_006482871.1	1e-103	(Citrus sinensis)
STRING	XP_006439109.1	1e-103	(Citrus clementina)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G30500.2	1e-25	nuclear factor Y, subunit A7

Link Out ? help Back to Top
Phytozome	orange1.1g028946m

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]