PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g029411m
Common NameCISIN_1g029411mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family TALE
Protein Properties Length: 195aa    MW: 22159.9 Da    PI: 6.1405
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g029411mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox30.37.2e-101371702255
                        SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
           Homeobox  22 nrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                         +yps+ ++  LA+++gL+++q+ +WF N+R ++
  orange1.1g029411m 137 WPYPSEPQKLALAESTGLDQKQINNWFINQRKRH 170
                        58*****************************885 PP
2ELK36.41.1e-1290111122
                ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                        +LK+qLlr Ysg+LgsLkqEF+
  orange1.1g029411m  90 DLKDQLLRRYSGSLGSLKQEFL 111
                        6********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012565.1E-22960IPR005541KNOX2
PfamPF037911.2E-201359IPR005541KNOX2
PROSITE profilePS5121310.5890110IPR005539ELK domain
PfamPF037893.7E-1090111IPR005539ELK domain
SMARTSM011882.5E-690111IPR005539ELK domain
PROSITE profilePS5007112.552110173IPR001356Homeobox domain
SMARTSM003897.5E-14112177IPR001356Homeobox domain
SuperFamilySSF466891.2E-19112182IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.6E-27115176IPR009057Homeodomain-like
CDDcd000866.91E-12122174No hitNo description
PfamPF059209.7E-16130169IPR008422Homeobox KN domain
PROSITE patternPS000270148171IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 195 aa     Download sequence    Send to blast
MSRSSAGTAA SRVGDDPALD QFMEAYCEML TKYEQELTKP FKDASLFLSE IDAQLKTLTV  60
SSNISGQSGS SEEEIDVKDH CIDPLAEDRD LKDQLLRRYS GSLGSLKQEF LKKKKKGKLP  120
KEARQLLLDW WSRHHRWPYP SEPQKLALAE STGLDQKQIN NWFINQRKRH WKPSEDMQFN  180
DISIMNGPEG DAAV*
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: First expressed in the embryo proliferation stage, increases during early somatic embryo development and decreases thereafter.
UniprotTISSUE SPECIFICITY: Expressed mainly in embryonic tissues. Weakly detected in stems and hypocotyl.
Functional Description ? help Back to Top
Source Description
UniProtPossible transcription activator involved in early embryonic development. Probably binds to the DNA sequence 5'-TGAC-3'.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF5337022e-33EF533702.1 Glycine max clone BAC GM_WBb098N11, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024046106.11e-129homeobox protein knotted-1-like LET6
RefseqXP_024950608.11e-129homeobox protein knotted-1-like LET6
SwissprotP466081e-82HSBH1_SOYBN; Homeobox protein SBH1
TrEMBLA0A067ESV61e-141A0A067ESV6_CITSI; Uncharacterized protein
STRINGXP_006469758.11e-116(Citrus sinensis)
STRINGXP_006447622.11e-116(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM64732644
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G62360.13e-59KNOX/ELK homeobox transcription factor
Publications ? help Back to Top
  1. Shu Y, et al.
    GmSBH1, a homeobox transcription factor gene, relates to growth and development and involves in response to high temperature and humidity stress in soybean.
    Plant Cell Rep., 2015. 34(11): p. 1927-37
    [PMID:26205508]