PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

orange1.1g029660m

Common Name

CISIN_1g028980mg, LOC102611194

Organism

Citrus sinensis

Taxonomic ID

2711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

YABBY

Protein Properties

Length: 191aa MW: 21248.2 Da PI: 8.5027

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
orange1.1g029660m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	207.1	6.5e-64	7	163	4	170
YABBY 4 fssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesasts 95 + ++eq+Cy+ CnfCn +lavsvP +sl+ +vtvrCGhC++l svn+a a q l+ ++ + ++ ++ +++ ++++ +++ orange1.1g029660m 7 DVAPEQLCYIPCNFCNIVLAVSVPCSSLLDIVTVRCGHCSNLWSVNMAAAFQSLSWQDV-H------HHQAPSYASPECRIDLGSSSKCNNK 91 5689**********************************************9999995.2......2333333333444444444444444 PP YABBY 96 vsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 +s+++ ++n+ e v+rPPekrqrvPsayn+fikeeiqrika+nPdishreafs+aaknWahfP+ihfgl orange1.1g029660m 92 ISAMRTPTNKATEE---RVVNRPPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPHIHFGL 163 44433344444433...3589**************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	7.0E-71	9	163	IPR006780	YABBY protein
SuperFamily	SSF47095	3.93E-8	105	156	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	1.4E-4	111	157	IPR009071	High mobility group box domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009944	Biological Process	polarity specification of adaxial/abaxial axis
GO:1902183	Biological Process	regulation of shoot apical meristem development
GO:2000024	Biological Process	regulation of leaf development

Sequence ? help Back to Top
Protein Sequence Length: 191 aa Download sequence Send to blast
MSSCGIDVAP EQLCYIPCNF CNIVLAVSVP CSSLLDIVTV RCGHCSNLWS VNMAAAFQSL 60 SWQDVHHHQA PSYASPECRI DLGSSSKCNN KISAMRTPTN KATEERVVNR PPEKRQRVPS 120 AYNQFIKEEI QRIKANNPDI SHREAFSTAA KNWAHFPHIH FGLMLEANNQ PKLDDASGNR 180 LMSRTALRNK *

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Csi.11734	0.0	callus\| flower\| leaf

Functional Description ? help Back to Top
Source	Description
UniProt	Promotes adaxial cell identity. Regulates the initiation of embryonic shoot apical meristem (SAM) development. {ECO:0000269\|PubMed:19837869}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT090216	9e-70	BT090216.1 Soybean clone JCVI-FLGm-3N14 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006450896.1	1e-141	axial regulator YABBY 5 isoform X2
Refseq	XP_006475869.1	1e-141	axial regulator YABBY 5 isoform X2
Swissprot	Q8GW46	1e-85	YAB5_ARATH; Axial regulator YABBY 5
TrEMBL	A0A067GY39	1e-140	A0A067GY39_CITSI; Uncharacterized protein
TrEMBL	V4UP20	1e-140	V4UP20_9ROSI; Uncharacterized protein
STRING	XP_006475868.1	1e-137	(Citrus sinensis)
STRING	XP_006450895.1	1e-137	(Citrus clementina)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G26580.2	5e-88	YABBY family protein

Link Out ? help Back to Top
Phytozome	orange1.1g029660m
Entrez Gene	102611194

Publications ? help Back to Top
Husbands AY,Benkovics AH,Nogueira FT,Lodha M,Timmermans MC The ASYMMETRIC LEAVES Complex Employs Multiple Modes of Regulation to Affect Adaxial-Abaxial Patterning and Leaf Complexity. Plant Cell, 2015. 27(12): p. 3321-35 [PMID:26589551]