PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g029776m
Common NameCISIN_1g029713mg, LOC102624080
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family bHLH
Protein Properties Length: 189aa    MW: 21037.6 Da    PI: 6.523
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g029776mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.73.1e-11960255
                       HHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                HLH  2 rrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55
                       r+  + +Er+RR++++  +++L +++P+ +   p +  s  + L +A++YIk Lq
  orange1.1g029776m  9 RTDRKTIERNRRNQMKALYSTLNSIVPHqR---PMEATSLPDQLDEATKYIKRLQ 60
                       778899**********************66...9999*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474598.37E-12574IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.01E-6564No hitNo description
PROSITE profilePS5088811.293759IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.8E-7960IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.2E-11973IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0050832Biological Processdefense response to fungus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 189 aa     Download sequence    Send to blast
MENNPSSSRT DRKTIERNRR NQMKALYSTL NSIVPHQRPM EATSLPDQLD EATKYIKRLQ  60
TNLERMKERK ERLMGIEKPD AAAATSSSGN SSGTITTGLR SPQIEIHEMG SALEVVLTTG  120
LDFQFMFIET IRLLHEEGVE IVNASFNVVE DTIFHTIHSK IGDSGSDHDA SARISERLKK  180
FGQDGSAF*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Csi.88800.0leaf
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006467790.11e-137transcription factor bHLH162 isoform X2
RefseqXP_006467791.11e-137transcription factor bHLH162 isoform X2
RefseqXP_024950353.11e-137transcription factor bHLH162 isoform X2
TrEMBLA0A067GKY01e-136A0A067GKY0_CITSI; Uncharacterized protein
STRINGXP_006449353.11e-136(Citrus clementina)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20970.14e-45bHLH family protein