PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g029903m
Common NameCISIN_1g029903mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family G2-like
Protein Properties Length: 186aa    MW: 21007.9 Da    PI: 9.3923
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g029903mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like1023.8e-3292145255
            G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                        prlrWtpeLH +Fv+ave+LGG+++AtPk +l++m++kgL+++hvkSHLQ+YR 
  orange1.1g029903m  92 PRLRWTPELHLCFVQAVERLGGQDRATPKLVLQFMNIKGLSISHVKSHLQMYRN 145
                        8****************************************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.607.3E-3088146IPR009057Homeodomain-like
PROSITE profilePS5129413.71488148IPR017930Myb domain
SuperFamilySSF466894.12E-1689146IPR009057Homeodomain-like
TIGRFAMsTIGR015571.9E-2492147IPR006447Myb domain, plants
PfamPF002492.6E-1093144IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 186 aa     Download sequence    Send to blast
MPTLIYNALL ETGEENYSQL YRKMKGSTDH STSDHSKKTN HSNKIGTSDP NIYCKSIKGE  60
SSSNSSIEET VNDQNKAASS GSTRQYNRSK TPRLRWTPEL HLCFVQAVER LGGQDRATPK  120
LVLQFMNIKG LSISHVKSHL QMYRNKKIDD PNQGIFIYFL CHPSLLQILG FCLFLGLKDC  180
HHTFI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A2e-1993147458Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B2e-1993147458Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A2e-1993147357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B2e-1993147357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C2e-1993147357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D2e-1993147357Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A2e-1993147458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C2e-1993147458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D2e-1993147458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F2e-1993147458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H2e-1993147458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J2e-1993147458Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006486285.11e-107uncharacterized protein LOC102620939
RefseqXP_024041316.11e-107uncharacterized protein LOC18044186
TrEMBLA0A067FNE21e-136A0A067FNE2_CITSI; Uncharacterized protein
STRINGXP_006435783.11e-118(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM36328184
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40260.19e-43G2-like family protein