PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g030306m
Common NameCISIN_1g030306mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family NAC
Protein Properties Length: 180aa    MW: 20889.5 Da    PI: 4.7185
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g030306mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM48.62.6e-1561457128
                NAM   7 FhPtdeelvveyLkkkvegkkleleevikevdiykvePwdL.pk..................kvka..eekewyfFskrdkkyatgkrknra 77 
                        ++P d+ l+ + L++k+ ++++e+ + + +++i++++P d+ p                         +ek +y  ++++  y     ++r 
  orange1.1g030306m   6 YNPFDQSLI-KQLNNKIIDEPVEFPD-LITTEINDHHPADFfPGsllrafctsfnnvqlpkgG--DrdREKGCYVLTPKHLLYGLTWLPERR 93 
                        68*******.66*********99966.55669********95436889999988877665432..13356688***********99999999 PP

                NAM  78 tksgyWkatgk.dkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                        +k+gyWk  g  d +++ + g+lv +k++++f++  ++ g+ktdW m eyrl
  orange1.1g030306m  94 AKNGYWKPYGYiDGRIFGACGKLVAIKQSFTFHEPGENIGRKTDWNMTEYRL 145
                        9********98799************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100519.0741164IPR003441NAC domain
PfamPF023651.7E-86145IPR003441NAC domain
SuperFamilySSF1019411.83E-186164IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 180 aa     Download sequence    Send to blast
METDPYNPFD QSLIKQLNNK IIDEPVEFPD LITTEINDHH PADFFPGSLL RAFCTSFNNV  60
QLPKGGDRDR EKGCYVLTPK HLLYGLTWLP ERRAKNGYWK PYGYIDGRIF GACGKLVAIK  120
QSFTFHEPGE NIGRKTDWNM TEYRLLKHSC TSLDSWVLCK IYWESEIIEN EDFSDEEEE*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006479704.11e-111NAC domain-containing protein 72-like
RefseqXP_024043265.11e-111NAC domain-containing protein 68-like
TrEMBLA0A067FZ581e-132A0A067FZ58_CITSI; Uncharacterized protein
STRINGXP_006479704.11e-111(Citrus sinensis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27410.24e-15NAC family protein