PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

orange1.1g030496m

Common Name

CISIN_1g0264741mg

Organism

Citrus sinensis

Taxonomic ID

2711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

NF-YA

Protein Properties

Length: 177aa MW: 19640.1 Da PI: 10.0273

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
orange1.1g030496m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	105	6.3e-33	81	137	1	58
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 +ep++VNaKQy++Il+RRq+Rak+e+e+k+ ksrkpylheSRh hAlrR+Rg+gGrF orange1.1g030496m 81 EEPVFVNAKQYHGILRRRQSRAKAESENKV-LKSRKPYLHESRHLHALRRARGCGGRF 137 69**************************.************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00521	1.3E-36	79	140	IPR001289	Nuclear transcription factor Y subunit A
PROSITE profile	PS51152	37.605	80	140	IPR001289	Nuclear transcription factor Y subunit A
Pfam	PF02045	4.9E-28	82	137	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	1.6E-23	83	105	IPR001289	Nuclear transcription factor Y subunit A
PROSITE pattern	PS00686	0	85	105	IPR018362	CCAAT-binding factor, conserved site
PRINTS	PR00616	1.6E-23	114	137	IPR001289	Nuclear transcription factor Y subunit A

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0045892	Biological Process	negative regulation of transcription, DNA-templated
GO:0016602	Cellular Component	CCAAT-binding factor complex
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 177 aa Download sequence Send to blast
MGMSHPSITT PNVQYATHQV GAGHAMAPAA YPYPDPYYRS IFAPYDAQPY PPQPYGGQPM 60 VHLQLMGIQQ AGVPLPTDAV EEPVFVNAKQ YHGILRRRQS RAKAESENKV LKSRKPYLHE 120 SRHLHALRRA RGCGGRFLNS KKNENQQKGM ASDDKSQSNL NLNSDKNEIA SSDRQS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4awl_A	1e-21	80	145	1	66	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
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Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Csi.2305	0.0	callus\| flower\| fruit

Functional Description ? help Back to Top
Source	Description
UniProt	Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AM472177	1e-53	AM472177.2 Vitis vinifera contig VV78X243821.10, whole genome shotgun sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006468306.1	1e-129	nuclear transcription factor Y subunit A-7 isoform X2
Swissprot	Q84JP1	6e-68	NFYA7_ARATH; Nuclear transcription factor Y subunit A-7
TrEMBL	A0A067GIN4	1e-128	A0A067GIN4_CITSI; Uncharacterized protein
TrEMBL	A0A067GIX8	1e-128	A0A067GIX8_CITSI; Uncharacterized protein
STRING	XP_006468304.1	1e-129	(Citrus sinensis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G30500.2	2e-54	nuclear factor Y, subunit A7

Link Out ? help Back to Top
Phytozome	orange1.1g030496m

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]