PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g030584m
Common NameCISIN_1g030584mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family FAR1
Protein Properties Length: 176aa    MW: 19759.2 Da    PI: 8.8937
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g030584mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR162.11.7e-1952137291
               FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 
                        +Y++Y+k+ GF v++++skk   +g     tf C ++g+++++ ++    +r++++t+tgC+ak+   +++dgkw+v +l leHnH l+p
  orange1.1g030584m  52 YYKAYGKQKGFPVKRRTSKKG-SDGILRYVTFACGRSGTSRSNPSN---FSRSQTNTKTGCNAKVGGCLDEDGKWQVRTLILEHNHGLNP 137
                        8**************999887.899999*************99988...8999999******************************9975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.8E-1652137IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 176 aa     Download sequence    Send to blast
MKDLEKEGLV ILKDDGLEGN VDEFENVEDV EKRVDEPEFG ISFDSADEMF TYYKAYGKQK  60
GFPVKRRTSK KGSDGILRYV TFACGRSGTS RSNPSNFSRS QTNTKTGCNA KVGGCLDEDG  120
KWQVRTLILE HNHGLNPGKS MYFRCNRNSS SHVKRQLETN DRAGKKLLNM MMSHS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015384134.11e-116protein FAR-RED IMPAIRED RESPONSE 1-like isoform X3
TrEMBLA0A067GVL31e-128A0A067GVL3_CITSI; Uncharacterized protein
STRINGXP_006472948.11e-114(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17343310
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G15090.15e-14FAR1 family protein