PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g030909m
Common NameCISIN_1g030909mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family NAC
Protein Properties Length: 170aa    MW: 19146 Da    PI: 10.2763
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g030909mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM47.17.7e-151863148
                NAM  1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp 48
                       lppGfrFhP+d+elv++yL kkv++++ ++   ++ vd++k+ePwd+p
  orange1.1g030909m 18 LPPGFRFHPRDDELVCDYLMKKVTHTNESI--LLAAVDLNKCEPWDIP 63
                       79**********************999666..79************98 PP
2NAM80.92.7e-256412171129
                NAM  71 gkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129
                        g r+nrat+sgyWkatgkd+++l+ kg+lvg++ktLvfy+grapkg+kt+Wvmhe+rle
  orange1.1g030909m  64 GLRTNRATASGYWKATGKDRAILR-KGSLVGMRKTLVFYRGRAPKGKKTEWVMHEFRLE 121
                        569********************9.999****************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.35E-429126IPR003441NAC domain
PROSITE profilePS5100526.99618146IPR003441NAC domain
PfamPF023657.4E-2319120IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 170 aa     Download sequence    Send to blast
MSSSNNSNNN IRMVEAQLPP GFRFHPRDDE LVCDYLMKKV THTNESILLA AVDLNKCEPW  60
DIPGLRTNRA TASGYWKATG KDRAILRKGS LVGMRKTLVF YRGRAPKGKK TEWVMHEFRL  120
EGPFANSPKA SSLKIGCCVE CFTKREKFLA NRAWEAAAMT TQALHHSHH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-331314112160NO APICAL MERISTEM PROTEIN
1ut4_B2e-331314112160NO APICAL MERISTEM PROTEIN
1ut7_A2e-331314112160NO APICAL MERISTEM PROTEIN
1ut7_B2e-331314112160NO APICAL MERISTEM PROTEIN
3swm_A3e-331314115163NAC domain-containing protein 19
3swm_B3e-331314115163NAC domain-containing protein 19
3swm_C3e-331314115163NAC domain-containing protein 19
3swm_D3e-331314115163NAC domain-containing protein 19
3swp_A3e-331314115163NAC domain-containing protein 19
3swp_B3e-331314115163NAC domain-containing protein 19
3swp_C3e-331314115163NAC domain-containing protein 19
3swp_D3e-331314115163NAC domain-containing protein 19
4dul_A2e-331314112160NAC domain-containing protein 19
4dul_B2e-331314112160NAC domain-containing protein 19
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Predominantly expressed in the root tip and in lateral root initiation sites. Also detected in expanding cotyledon, and in leaf primordia. {ECO:0000269|PubMed:11114891}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that mediates auxin signaling to promote lateral root development. Activates the expression of two downstream auxin-responsive genes, DBP and AIR3. {ECO:0000269|PubMed:11114891}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006441024.11e-82NAC domain-containing protein 21/22
SwissprotQ84TE64e-59NAC22_ARATH; NAC domain-containing protein 21/22
TrEMBLA0A067EDZ51e-125A0A067EDZ5_CITSI; Uncharacterized protein
STRINGXP_006441024.15e-82(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM36192859
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G56010.27e-61NAC domain containing protein 1
Publications ? help Back to Top
  1. Le Hénanff G, et al.
    Grapevine NAC1 transcription factor as a convergent node in developmental processes, abiotic stresses, and necrotrophic/biotrophic pathogen tolerance.
    J. Exp. Bot., 2013. 64(16): p. 4877-93
    [PMID:24043850]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Xiao D, et al.
    SENESCENCE-SUPPRESSED PROTEIN PHOSPHATASE Directly Interacts with the Cytoplasmic Domain of SENESCENCE-ASSOCIATED RECEPTOR-LIKE KINASE and Negatively Regulates Leaf Senescence in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1275-91
    [PMID:26304848]
  4. Huo X,Wang C,Teng Y,Liu X
    Identification of miRNAs associated with dark-induced senescence in Arabidopsis.
    BMC Plant Biol., 2015. 15: p. 266
    [PMID:26530097]
  5. Chen X, et al.
    Auxin-Independent NAC Pathway Acts in Response to Explant-Specific Wounding and Promotes Root Tip Emergence during de Novo Root Organogenesis in Arabidopsis.
    Plant Physiol., 2016. 170(4): p. 2136-45
    [PMID:26850273]
  6. Liu C,Wang B,Li Z,Peng Z,Zhang J
    TsNAC1 Is a Key Transcription Factor in Abiotic Stress Resistance and Growth.
    Plant Physiol., 2018. 176(1): p. 742-756
    [PMID:29122985]