PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g030937m
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family C3H
Protein Properties Length: 170aa    MW: 19887.2 Da    PI: 10.5417
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g030937mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH23.11.3e-07727526
                       --SGGGGTS--TTTTT-SS-SS CS
            zf-CCCH  5 lCrffartGtCkyGdrCkFaHg 26
                        Cr f+r G+C +Gd CkF+H 
  orange1.1g030937m  7 VCRAFQR-GECTRGDGCKFSHN 27
                       6******.*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.859229IPR000571Zinc finger, CCCH-type
SMARTSM003566.8E-4428IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.88E-6527IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.7E-6729IPR000571Zinc finger, CCCH-type
PfamPF006429.2E-6727IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0016607Cellular Componentnuclear speck
GO:0000166Molecular Functionnucleotide binding
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 170 aa     Download sequence    Send to blast
MREERGVCRA FQRGECTRGD GCKFSHNEQR AANTGGGPQD RSSRWGHEKF EGFSWGKNDS  60
SSRATGSGRV ALEGNPNQSD RREEKRSIRH DHREKPREDH GRREDKRSRR HSDNNEFEAR  120
SREDHYRRDE KRPKRHESES YLREDQDRRG GDKSSTGRGD SSSHRHRER*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Csi.16881e-153fruit
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006425052.11e-116zinc finger CCCH domain-containing protein 42 isoform X1
SwissprotQ9SD617e-17C3H42_ARATH; Zinc finger CCCH domain-containing protein 42
TrEMBLA0A2H5NCF11e-114A0A2H5NCF1_CITUN; Uncharacterized protein (Fragment)
TrEMBLV4SCP31e-114V4SCP3_9ROSI; Uncharacterized protein
STRINGXP_006425052.11e-115(Citrus clementina)
Publications ? help Back to Top
  1. Kim DW,Jeon SJ,Hwang SM,Hong JC,Bahk JD
    The C3H-type zinc finger protein GDS1/C3H42 is a nuclear-speckle-localized protein that is essential for normal growth and development in Arabidopsis.
    Plant Sci., 2016. 250: p. 141-153
    [PMID:27457991]