PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g031144m
Common NameCISIN_1g031144mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family C3H
Protein Properties Length: 166aa    MW: 19091.2 Da    PI: 5.0057
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g031144mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH32.41.6e-10103124526
                        --SGGGGTS--TTTTT-SS-SS CS
            zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                         C++++rtG C++G +CkF+H+
  orange1.1g031144m 103 DCSYYLRTGRCRFGMSCKFNHP 124
                        6********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003561.2E-498125IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.80798126IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.29E-6100126IPR000571Zinc finger, CCCH-type
PfamPF006424.4E-8103124IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.9E-5104123IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 166 aa     Download sequence    Send to blast
MLKLISESYI PSKWIFLMHP FDSNVNEENR YYTQLSLPPN SDLDPPPLDM QNLDIEDPED  60
QVDSDTEEEV ENVDKNNKQV DEVTGNQMTR RKFCYPQRPG VHDCSYYLRT GRCRFGMSCK  120
FNHPVPRQIQ SLNQSINSNT VSIEMNPNNS ANSNRMSTGK VKHMS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006471175.12e-72uncharacterized protein LOC102617450 isoform X2
TrEMBLA0A067FAA81e-120A0A067FAA8_CITSI; Uncharacterized protein
STRINGXP_006471174.12e-71(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2124855
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48440.18e-14C3H family protein