PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g031283m
Common NameCISIN_1g024093mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family MIKC_MADS
Protein Properties Length: 163aa    MW: 18442.5 Da    PI: 9.7109
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g031283mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF82.42.9e-26959151
                       S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
             SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                       krien +nrqvtfskRrng++KKA EL +LCda+v+++i sst k +ey+s
  orange1.1g031283m  9 KRIENATNRQVTFSKRRNGLFKKARELTILCDAKVSILICSSTAKAHEYIS 59
                       79***********************************************86 PP
2K-box48.15.1e-1771139169
              K-box   1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskK 69 
                        yqk+  ++l+++++e++ ++l  +++ ++ L++++R+++Ge+L++L+l+eL  Leq++ ++lk i + K
  orange1.1g031283m  71 YQKTLRVDLWSSHYEKMLENLGAVEQVNRILKKQIRQRMGESLNDLTLEELTGLEQDILDGLKIIHECK 139
                        78888899*******************************************************998765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006630.614161IPR002100Transcription factor, MADS-box
SMARTSM004322.4E-37160IPR002100Transcription factor, MADS-box
SuperFamilySSF554556.15E-33290IPR002100Transcription factor, MADS-box
CDDcd002652.43E-37280No hitNo description
PRINTSPR004046.2E-26323IPR002100Transcription factor, MADS-box
PfamPF003191.1E-221057IPR002100Transcription factor, MADS-box
PRINTSPR004046.2E-262338IPR002100Transcription factor, MADS-box
PRINTSPR004046.2E-263859IPR002100Transcription factor, MADS-box
PfamPF014861.2E-982139IPR002487Transcription factor, K-box
PROSITE profilePS512978.56284162IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 163 aa     Download sequence    Send to blast
MGRGKMEMKR IENATNRQVT FSKRRNGLFK KARELTILCD AKVSILICSS TAKAHEYISP  60
STTTKQLLDL YQKTLRVDLW SSHYEKMLEN LGAVEQVNRI LKKQIRQRMG ESLNDLTLEE  120
LTGLEQDILD GLKIIHECKV IKPYTLCASS STTVIVNVSN LL*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Csi.3700.0fruit
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Predominantly expressed in petals and stamens, less in carpels and sepals.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in the genetic control of flower development. Necessary for the normal development of petals. Absence of the PMADS1 protein causes transformation of petals into sepals.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB2186140.0AB218614.1 Citrus unshiu CitMADS8 mRNA for MADS-box protein, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006474489.12e-97floral homeotic protein PMADS 1
SwissprotQ074722e-63MADS1_PETHY; Floral homeotic protein PMADS 1
TrEMBLA0A067GDP51e-115A0A067GDP5_CITSI; Uncharacterized protein
STRINGXP_006474489.16e-97(Citrus sinensis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54340.13e-53MIKC_MADS family protein
Publications ? help Back to Top
  1. Immink RG, et al.
    Analysis of the petunia MADS-box transcription factor family.
    Mol. Genet. Genomics, 2003. 268(5): p. 598-606
    [PMID:12589434]
  2. Kush A,Brunelle A,Shevell D,Chua NH
    The cDNA sequence of two MADS box proteins in Petunia.
    Plant Physiol., 1993. 102(3): p. 1051-2
    [PMID:8278527]