PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

orange1.1g031304m

Common Name

CISIN_1g026809mg, LOC102621096

Organism

Citrus sinensis

Taxonomic ID

2711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

WOX

Protein Properties

Length: 163aa MW: 18576.8 Da PI: 6.5216

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
orange1.1g031304m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	62.1	8.5e-20	22	82	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+t+t+ ql++Le ++ + + +p ++++++++++l +++e++V++WFqNrRa+ k+ orange1.1g031304m 22 RQRWTPTPAQLQILEHVYDEcKGTPRKQKIQDMTAELakhgQISETNVYNWFQNRRARLKR 82 89***************9889*********************************997 PP
2	Wus_type_Homeobox	94.1	1.2e-30	21	84	2	65
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 ar+RWtPtp Q++iLe++y++ tP k++iq++taeL+++G+i+++NV++WFQNr+aR ++kq orange1.1g031304m 21 ARQRWTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKRKQ 84 789***********************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	5.7E-16	15	85	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.71E-16	17	84	IPR009057	Homeodomain-like
PROSITE profile	PS50071	13.475	18	83	IPR001356	Homeobox domain
SMART	SM00389	4.6E-12	20	87	IPR001356	Homeobox domain
CDD	cd00086	1.84E-12	22	84	No hit	No description
Pfam	PF00046	1.3E-17	22	82	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 163 aa Download sequence Send to blast
MRMGNPYFDP FVASGSQKLT ARQRWTPTPA QLQILEHVYD ECKGTPRKQK IQDMTAELAK 60 HGQISETNVY NWFQNRRARL KRKQSGVVPN NAESEAETVT HAESRKQNPE SIQSLEDSAP 120 PPRDEDIYPQ SPDLGIDQMI GKMEIPGSFS FHWQVDRYDM LG*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	75	83	RRARLKRKQ

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Csi.2328	0.0	flower\| fruit

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor which may be involved in developmental processes. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006435385.1	1e-120	WUSCHEL-related homeobox 13
Refseq	XP_006473808.1	1e-120	WUSCHEL-related homeobox 13
Swissprot	O81788	9e-42	WOX13_ARATH; WUSCHEL-related homeobox 13
TrEMBL	A0A067GZW5	1e-119	A0A067GZW5_CITSI; Uncharacterized protein
TrEMBL	A0A067HBB4	1e-119	A0A067HBB4_CITSI; Uncharacterized protein
TrEMBL	A0A2H5PA83	1e-119	A0A2H5PA83_CITUN; Uncharacterized protein
TrEMBL	V4TAU1	1e-119	V4TAU1_9ROSI; Uncharacterized protein
STRING	XP_006473808.1	1e-120	(Citrus sinensis)
STRING	XP_006435385.1	1e-120	(Citrus clementina)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35550.1	4e-44	WUSCHEL related homeobox 13

Link Out ? help Back to Top
Phytozome	orange1.1g031304m
Entrez Gene	102621096

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Dolzblasz A, et al. Stem Cell Regulation by Arabidopsis WOX Genes. Mol Plant, 2016. 9(7): p. 1028-39 [PMID:27109605]