PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g031483m
Common NameCISIN_1g031483mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family MYB_related
Protein Properties Length: 160aa    MW: 17763.6 Da    PI: 4.7474
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g031483mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding64.12.7e-201055148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                       rg++T+eEd+l+++++k+lG++ W++Ia++++ gRt++q+k++w+++l
  orange1.1g031483m 10 RGNFTEEEDDLIIRLHKLLGNR-WALIAKRVP-GRTDNQVKNYWNSHL 55
                       89********************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.07E-19164IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.2E-27159IPR009057Homeodomain-like
PROSITE profilePS5129429.224559IPR017930Myb domain
SMARTSM007171.9E-19957IPR001005SANT/Myb domain
PfamPF002493.0E-191055IPR001005SANT/Myb domain
CDDcd001671.12E-161255No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 160 aa     Download sequence    Send to blast
MNYLSPNVNR GNFTEEEDDL IIRLHKLLGN RWALIAKRVP GRTDNQVKNY WNSHLSKKLG  60
IKDQTRGVGD SPSLTQSQKI QPITDQNANA IIDPCDENTK SYSIDNGTQK AVNVSGSSTQ  120
ESNTTDESFI NSLWNSCDDD LDLGTFFTMK GFVDGYSLI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-1825951108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006470329.11e-114transcription factor WER-like
TrEMBLA0A067FFQ11e-114A0A067FFQ1_CITSI; Uncharacterized protein
STRINGXP_006470329.11e-113(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14750.11e-44myb domain protein 66