PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g031935m
Common NameCISIN_1g031935mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family NAC
Protein Properties Length: 151aa    MW: 17764 Da    PI: 6.7178
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g031935mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM103.33.1e-3221312128
                NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikev.diykvePwdLpk..kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 
                          G++F+P+d el+ + Lk+k  + +++ ++ ik++ +i+++ePwdLp+  k+++e++  yfF + + ky++++r  r t++g Wk t +d 
  orange1.1g031935m   2 ESGYKFQPSD-ELILRLLKEKRLNPHFSQHHPIKDIdHICSLEPWDLPTesKTESEDQVFYFFYEPRYKYRNSNRVDRRTEAGQWKITSEDS 92 
                        67*******9.6888***********999888****66**********523555566677******************************** PP

                NAM  91 evlskkgelvglkktLvfy.kg.rapkgektdWvmheyrl 128
                        ++ + ++ l+g+kk L+fy +g +++ ++ktdW+mhey++
  orange1.1g031935m  93 HIEA-GNGLTGTKKFLTFYcRGpDSKVPVKTDWLMHEYHV 131
                        ***9.999***********7555667788*********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100530.9751148IPR003441NAC domain
SuperFamilySSF1019415.75E-323138IPR003441NAC domain
PfamPF023657.1E-153131IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 151 aa     Download sequence    Send to blast
MESGYKFQPS DELILRLLKE KRLNPHFSQH HPIKDIDHIC SLEPWDLPTE SKTESEDQVF  60
YFFYEPRYKY RNSNRVDRRT EAGQWKITSE DSHIEAGNGL TGTKKFLTFY CRGPDSKVPV  120
KTDWLMHEYH VKDDPHYEAV LKCTSLLPIT *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A3e-13113115140Stress-induced transcription factor NAC1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Csi.92051e-135fruit
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006465072.16e-95NAC domain-containing protein 92-like
RefseqXP_024040379.16e-95NAC domain-containing protein 92-like
TrEMBLA0A067D7V71e-109A0A067D7V7_CITSI; Uncharacterized protein
STRINGXP_006465072.12e-94(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM13336429
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35580.13e-21NAC transcription factor-like 9