PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g031966m
Common NameCISIN_1g031966mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family C2H2
Protein Properties Length: 151aa    MW: 16684.5 Da    PI: 11.1279
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g031966mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.20.00122244123
                       EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                       ++C+ C++ F++   L  H  +H
  orange1.1g031966m 22 FECKTCNRQFPSFQALGGHRASH 44
                       89**********99999998887 PP
2zf-C2H213.70.000196890123
                       EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                       ++C++Cg+ F     L  H+r+H
  orange1.1g031966m 68 HECSICGQEFAMGQALGGHMRRH 90
                       78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139122.2E-132146IPR007087Zinc finger, C2H2
SuperFamilySSF576671.6E-92190No hitNo description
SMARTSM003550.162244IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.8272249IPR007087Zinc finger, C2H2
PROSITE patternPS0002802444IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.608.1E-46690IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139126.7E-116891IPR007087Zinc finger, C2H2
PROSITE profilePS501579.8476890IPR007087Zinc finger, C2H2
SMARTSM003550.0956890IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002807090IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0071289Biological Processcellular response to nickel ion
GO:2000280Biological Processregulation of root development
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 151 aa     Download sequence    Send to blast
MLLTRSNRAK LPIKKRLASD VFECKTCNRQ FPSFQALGGH RASHKKPRLI NGETKTLSST  60
TATKPKLHEC SICGQEFAMG QALGGHMRRH RIAMNESLNS AVIVSQSPPV LRRSNSSRRV  120
FGLDLNLTPL ENDLEVLFGK MAPKVDLLMT *
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in leaves. {ECO:0000269|PubMed:9132053}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in stress responses. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006429010.11e-106zinc finger protein ZAT11
RefseqXP_006480743.11e-106zinc finger protein ZAT11
SwissprotQ9SLD43e-44ZAT11_ARATH; Zinc finger protein ZAT11
TrEMBLA0A067DZU31e-106A0A067DZU3_CITSI; Uncharacterized protein
STRINGXP_006480743.11e-106(Citrus sinensis)
STRINGXP_006429010.11e-106(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM53128150
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37430.11e-46C2H2 family protein