PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g032221m
Common NameCISIN_1g032227mg, LOC102618163
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family LSD
Protein Properties Length: 146aa    MW: 15104.6 Da    PI: 7.9166
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g032221mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD142.31.3e-132852125
            zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                       C+gCr+lL YP GA+sV+Ca+C++V
  orange1.1g032221m 28 CSGCRNLLLYPVGATSVCCAVCNAV 52
                       ************************9 PP
2zf-LSD146.84.9e-156791125
            zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                       CggC+tlL+Y rGA+sV+C++C+tV
  orange1.1g032221m 67 CGGCHTLLMYIRGATSVQCSCCHTV 91
                       ************************9 PP
3zf-LSD141.91.7e-13105129125
            zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdtV 25 
                        Cg+Cr lL+Y +GA+sV+Ca+C++V
  orange1.1g032221m 105 CGNCRMLLMYQYGARSVKCAVCNFV 129
                        ***********************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.90.10.108.0E-424126No hitNo description
TIGRFAMsTIGR010539.8E-132555IPR005735Zinc finger, LSD1-type
PfamPF069431.4E-102852IPR005735Zinc finger, LSD1-type
SuperFamilySSF486954.6E-528126IPR011031Multihaem cytochrome
TIGRFAMsTIGR010538.7E-156493IPR005735Zinc finger, LSD1-type
PfamPF069431.3E-126791IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010532.9E-12102132IPR005735Zinc finger, LSD1-type
PfamPF069431.0E-12105129IPR005735Zinc finger, LSD1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009814Biological Processdefense response, incompatible interaction
GO:0034051Biological Processnegative regulation of plant-type hypersensitive response
GO:0034052Biological Processpositive regulation of plant-type hypersensitive response
GO:0045595Biological Processregulation of cell differentiation
GO:2000121Biological Processregulation of removal of superoxide radicals
Sequence ? help Back to Top
Protein Sequence    Length: 146 aa     Download sequence    Send to blast
MPVPLAPYPT PPAPYTPPAN GAQSQLVCSG CRNLLLYPVG ATSVCCAVCN AVTAVPPPGT  60
EMAQLVCGGC HTLLMYIRGA TSVQCSCCHT VNLALEANQV AHVNCGNCRM LLMYQYGARS  120
VKCAVCNFVT AVGASTSTTE QKFNT*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Csi.8630.0fruit
Functional Description ? help Back to Top
Source Description
UniProtPositive regulator of reactive oxygen-induced cell death. May be involved in the repression of the copper/zinc superoxide dismutase CSD1 and CSD2 that detoxify accumulating superoxide before the reactive oxygen species (ROS) can trigger a cell death cascade. LSD1 and LOL1 have antagonistic effects on CSD1 and CSD2 accumulation to regulate oxidative stress-induced cell death. {ECO:0000269|PubMed:12732715}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006436740.11e-100protein LOL1 isoform X2
RefseqXP_006485443.11e-100protein LOL1 isoform X1
RefseqXP_006485444.11e-100protein LOL1 isoform X1
SwissprotQ93ZB18e-83LOL1_ARATH; Protein LOL1
TrEMBLA0A067EIT96e-99A0A067EIT9_CITSI; Uncharacterized protein
TrEMBLA0A2H5QJ326e-99A0A2H5QJ32_CITUN; Uncharacterized protein
TrEMBLV4TED26e-99V4TED2_9ROSI; Uncharacterized protein
STRINGXP_006485443.11e-99(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM72932643
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32540.36e-69lsd one like 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]