PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g032247m
Common NameCISIN_1g032247mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family NAC
Protein Properties Length: 145aa    MW: 16763.8 Da    PI: 6.626
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g032247mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM95.11.1e-2971343128
                NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikev.diykvePwdLpk..kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 
                        +G++F+P+de l+v  Lk+k  + ++     ik++ +i+++eP dL +  ++++e++ +yfF + + ky++++r +r +++g Wk t +d +
  orange1.1g032247m   7 QGYKFQPSDE-LIVSLLKEKRLDPHFLY-GPIKDIgHICNLEPGDLATesETDSEDRACYFFYEPRYKYRNSNRVHRRAEAGHWKITSEDSQ 96 
                        7*******95.77799*99999998777.88****99*********8423666688899********************************* PP

                NAM  92 vlskkgelvglkktLvfykg..rapkgektdWvmheyrl 128
                        + + ++ l+g+kk L+fy+    ++ ++ktdWvmhey++
  orange1.1g032247m  97 IEA-SNGLIGTKKFLTFYRRspGSKVPVKTDWVMHEYHV 134
                        **9.8889**********6522344557*********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.83E-314140IPR003441NAC domain
PROSITE profilePS5100529.9855144IPR003441NAC domain
PfamPF023651.1E-157134IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 145 aa     Download sequence    Send to blast
MESHMGQGYK FQPSDELIVS LLKEKRLDPH FLYGPIKDIG HICNLEPGDL ATESETDSED  60
RACYFFYEPR YKYRNSNRVH RRAEAGHWKI TSEDSQIEAS NGLIGTKKFL TFYRRSPGSK  120
VPVKTDWVMH EYHVKDDPSY EVCA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A1e-13213412140Stress-induced transcription factor NAC1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Csi.7660.0fruit
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006465071.16e-90NAC domain-containing protein 7-like
TrEMBLA0A067EHP21e-105A0A067EHP2_CITSI; Uncharacterized protein
STRINGXP_006465071.12e-89(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM13336429
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35580.19e-20NAC transcription factor-like 9