PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g032258m
Common NameCISIN_1g032258mg, LOC102630037
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family ERF
Protein Properties Length: 145aa    MW: 15609.3 Da    PI: 8.4483
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g032258mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.85.5e-181463255
                AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                       +ykGVr +k +g+WvAe+r p++   r r++lg++ ta+eAa+a++aa  +l+g
  orange1.1g032258m 14 RYKGVRMRK-WGKWVAEVRQPNS---RGRIWLGSYKTADEAARAYDAAVVCLRG 63
                       69*****99.*******999843...48***********************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000187.54E-281473No hitNo description
PfamPF008478.6E-121463IPR001471AP2/ERF domain
PROSITE profilePS5103222.5241471IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.2E-301472IPR001471AP2/ERF domain
SMARTSM003805.8E-341477IPR001471AP2/ERF domain
SuperFamilySSF541711.83E-211473IPR016177DNA-binding domain
PRINTSPR003672.0E-91526IPR001471AP2/ERF domain
PRINTSPR003672.0E-93753IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 145 aa     Download sequence    Send to blast
MVRPSGGREG NNGRYKGVRM RKWGKWVAEV RQPNSRGRIW LGSYKTADEA ARAYDAAVVC  60
LRGSSATLNF PDNPPEIPLA DEMTPVQIQE FAFRHARRAP AQSVEDLGSN EAAVVSASGS  120
SSGYGVDDVG VDGAFYQSPG LWTF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-1712711272Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006474696.11e-102ethylene-responsive transcription factor ERF016
RefseqXP_024033512.11e-102ethylene-responsive transcription factor ERF016
SwissprotQ9C5913e-34ERF16_ARATH; Ethylene-responsive transcription factor ERF016
TrEMBLA0A067GEG81e-101A0A067GEG8_CITSI; Uncharacterized protein
TrEMBLA0A2H5NBQ01e-101A0A2H5NBQ0_CITUN; Uncharacterized protein
TrEMBLV4UIW11e-101V4UIW1_9ROSI; Uncharacterized protein
STRINGXP_006474696.11e-102(Citrus sinensis)
STRINGXP_006452852.11e-102(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G21960.11e-27ERF family protein