PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g032371m
Common NameCISIN_1g032371mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family NAC
Protein Properties Length: 143aa    MW: 16643.4 Da    PI: 6.1527
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g032371mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM95.67.6e-3071343128
                NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikev.diykvePwdLpk..kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 
                        +G++F+P+de l v  Lk+k  + +++    ik++ +i+++eP+dL +  ++++e++ +yfF + + ky++++r +r t++g Wk t +d +
  orange1.1g032371m   7 QGYKFQPSDE-LSVSLLKEKRLDPHFSY-GPIKDIgHICSLEPEDLATesETESEDQACYFFYEPHYKYRNSNRVHRRTEAGQWKITSEDSQ 96 
                        7*******96.66699*****9999999.88****99*********8423666678899********************************* PP

                NAM  92 vlskkgelvglkktLvfykg..rapkgektdWvmheyrl 128
                        + + +++l g+kk L+fy+    ++ ++ktdWvmhey++
  orange1.1g032371m  97 IEA-SNRLSGTKKFLTFYRRspGSKVPVKTDWVMHEYHV 134
                        **9.999***********6522344557*********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.75E-304139IPR003441NAC domain
PROSITE profilePS5100528.8695142IPR003441NAC domain
PfamPF023652.9E-147134IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 143 aa     Download sequence    Send to blast
MESHMGQGYK FQPSDELSVS LLKEKRLDPH FSYGPIKDIG HICSLEPEDL ATESETESED  60
QACYFFYEPH YKYRNSNRVH RRTEAGQWKI TSEDSQIEAS NRLSGTKKFL TFYRRSPGSK  120
VPVKTDWVMH EYHVKDDPSY EV*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Csi.7660.0fruit
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006465071.12e-99NAC domain-containing protein 7-like
TrEMBLA0A067E6A31e-103A0A067E6A3_CITSI; Uncharacterized protein
TrEMBLA0A1S8ABY17e-99A0A1S8ABY1_CITLI; NAC domain containing protein (Fragment)
STRINGXP_006465071.18e-99(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM13336429
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10490.16e-20NAC domain containing protein 52