PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g032401m
Common NameCISIN_1g032401mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family DBB
Protein Properties Length: 142aa    MW: 15353.3 Da    PI: 6.6307
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g032401mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box201.4e-06443538
           zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38
                        C+ +e+ e++  C  ++  lC +C ++ H        H+
  orange1.1g032401m  4 QCEVCEKAEAEVLCCADEAVLCSNCDVKVHTAnklsrkHQ 43
                       7*****************************5456666666 PP
2zf-B_box27.94.7e-0967108237
           zf-B_box   2 eerkCpeHeekelqlfCedCqqllCedClleeHkg......H 37 
                        + + C+ ++e +  +fC +++  lC++C +++H        H
  orange1.1g032401m  67 QLPSCDICQERNGFFFCLEDRAILCRQCDVSIHMAspflssH 108
                        7899******99*********************444555555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.627147IPR000315B-box-type zinc finger
SMARTSM003364.0E-10147IPR000315B-box-type zinc finger
CDDcd000211.05E-4547No hitNo description
PROSITE profilePS501199.00166113IPR000315B-box-type zinc finger
SMARTSM003368.9E-1366113IPR000315B-box-type zinc finger
PfamPF006437.4E-767108IPR000315B-box-type zinc finger
CDDcd000219.38E-769113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 142 aa     Download sequence    Send to blast
MKLQCEVCEK AEAEVLCCAD EAVLCSNCDV KVHTANKLSR KHQRFSLLKH NAAAASSSSS  60
SSPSASQLPS CDICQERNGF FFCLEDRAIL CRQCDVSIHM ASPFLSSHQR FLIGGIKVAL  120
ESSADNNSRT SESTGCEGRE F*
Functional Description ? help Back to Top
Source Description
UniProtActs as positive regulator of seedling photomorphogenesis and light-regulated inhibition of hypocotyl elongation, independently and in concert with HY5 and BBX21 (PubMed:18540109, PubMed:18796637, PubMed:18182030, PubMed:21427283). Acts as a positive regulator of de-etiolation and influences chloroplast biogenesis and function through regulation of genes encoding chloroplast proteins (PubMed:18182030). Acts downstream of COP1 and plays an important role in early and long-term adjustment of the shade avoidance syndrome (SAS) responses in natural environments (PubMed:21070414). Regulates the expression of genes responsive to light hormone signals which may contribute to optimal seedling development (PubMed:21427283). {ECO:0000269|PubMed:18182030, ECO:0000269|PubMed:18540109, ECO:0000269|PubMed:18796637, ECO:0000269|PubMed:21070414, ECO:0000269|PubMed:21427283}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By light. {ECO:0000269|PubMed:18182030}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024044660.12e-84B-box zinc finger protein 23
SwissprotQ9SYM23e-47BBX22_ARATH; B-box zinc finger protein 22
TrEMBLA0A067DJ927e-97A0A067DJ92_CITSI; Uncharacterized protein
STRINGXP_006478357.12e-82(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM125022430
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78600.15e-47light-regulated zinc finger protein 1