PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

orange1.1g032472m

Common Name

CISIN_1g032472mg

Organism

Citrus sinensis

Taxonomic ID

2711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

NAC

Protein Properties

Length: 141aa MW: 16586.1 Da PI: 10.0271

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
orange1.1g032472m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	115.3	6.2e-36	5	131	3	127
NAM 3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 +GfrF+Pt+ee++ Lkkk + ++++ ++ike+d y+++PwdLp+ +++ eek wyf+++r k+a++k+++r tksgyWk tgk ++ orange1.1g032472m 5 VGFRFKPTNEEII-SLLKKKRLDPDFSV-HTIKEIDFYSFDPWDLPRhsEIQCEEKVWYFYCERYYKSAKSKQAHRRTKSGYWKVTGKGSDI 94 7**********.89*9999999.78**********94357788999********************************** PP NAM 93 lsk.kgelvglkktLvfy.kgrapkgektdWvmheyr 127 ++k ++e++g+kk+L f + +a+k kt+Wvmhe + orange1.1g032472m 95 KRKnSTEVIGTKKILPFCpRRSASKKAKTEWVMHEIS 131 9966778*******766889999******87 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	35.801	3	140	IPR003441	NAC domain
SuperFamily	SSF101941	2.22E-35	4	137	IPR003441	NAC domain
Pfam	PF02365	1.4E-18	5	131	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 141 aa Download sequence Send to blast
MDSLVGFRFK PTNEEIISLL KKKRLDPDFS VHTIKEIDFY SFDPWDLPRH SEIQCEEKVW 60 YFYCERYYKS AKSKQAHRRT KSGYWKVTGK GSDIKRKNST EVIGTKKILP FCPRRSASKK 120 AKTEWVMHEI SVGDDPLYKV *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-21	6	129	20	139	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-21	6	129	20	139	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-21	6	129	20	139	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-21	6	129	20	139	NO APICAL MERISTEM PROTEIN
3swm_A	1e-21	6	129	23	142	NAC domain-containing protein 19
3swm_B	1e-21	6	129	23	142	NAC domain-containing protein 19
3swm_C	1e-21	6	129	23	142	NAC domain-containing protein 19
3swm_D	1e-21	6	129	23	142	NAC domain-containing protein 19
3swp_A	1e-21	6	129	23	142	NAC domain-containing protein 19
3swp_B	1e-21	6	129	23	142	NAC domain-containing protein 19
3swp_C	1e-21	6	129	23	142	NAC domain-containing protein 19
3swp_D	1e-21	6	129	23	142	NAC domain-containing protein 19
4dul_A	1e-21	6	129	20	139	NAC domain-containing protein 19
4dul_B	1e-21	6	129	20	139	NAC domain-containing protein 19
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015382149.1	2e-97	NAC domain-containing protein 40-like, partial
TrEMBL	A0A067DPF5	3e-99	A0A067DPF5_CITSI; Uncharacterized protein
STRING	XP_006465074.1	5e-95	(Citrus sinensis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM13336	4	29

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G39820.1	8e-30	NAC domain containing protein 94

Link Out ? help Back to Top
Phytozome	orange1.1g032472m