PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g032677m
Common NameCISIN_1g032677mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family MYB_related
Protein Properties Length: 137aa    MW: 15771.4 Da    PI: 5.2555
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g032677mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.43.8e-092466444
                       S-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
    Myb_DNA-binding  4 WTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                       W   Ed+l+ +a  +++ +   +W +Ia+ ++ g+++ ++++++
  orange1.1g032677m 24 WNRSEDKLFEHALVMFPEEspdRWQKIASQLP-GKSAVEVREHY 66
                       999**************99*************.**********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007173.4E-102072IPR001005SANT/Myb domain
SuperFamilySSF466892.17E-122278IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.2E-62270IPR009057Homeodomain-like
PfamPF002494.4E-82367IPR001005SANT/Myb domain
CDDcd001675.19E-82470No hitNo description
PROSITE profilePS500906.9572470IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 137 aa     Download sequence    Send to blast
MYQQDIKNDD SNNNSFAMTH STHWNRSEDK LFEHALVMFP EESPDRWQKI ASQLPGKSAV  60
EVREHYEALV HDVYEIDSGR VELPSYADDS DWDSPSQISF APKSTKHGDP ERKKGTPWTE  120
EEHKLFLIGL KKIRQG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A2e-1424861173RADIALIS
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006445756.29e-95transcription factor SRM1
RefseqXP_006485458.19e-95transcription factor SRM1
TrEMBLA0A067DIT24e-97A0A067DIT2_CITSI; Uncharacterized protein
STRINGXP_006445756.13e-94(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM51272750
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04760.12e-45MYB family protein