PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g032845m
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family NF-YB
Protein Properties Length: 133aa    MW: 15079.4 Da    PI: 6.0045
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g032845mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB41.82.6e-131197687
              NF-YB  6 rflPianvsrimkkvlPa...na..kiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvyl 87
                       ++lP + v r++k  l +   ++   + kda     e +  fi ++++ a+d c++ kr+tin++d+l a+ ++ f ++v+pl+  l
  orange1.1g032845m 11 EELPKTIVRRVVKDKLHNcspDTdiSVHKDALLAFCESARIFIHYLSATANDICKESKRQTINAEDVLKAIEEIDFTEFVDPLRDSL 97
                       56888889999998875422233114567888888888999*****************************************98766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.103.0E-27499IPR009072Histone-fold
PfamPF008083.6E-101281IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
SuperFamilySSF471132.55E-2213101IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 133 aa     Download sequence    Send to blast
METEKVVPEA EELPKTIVRR VVKDKLHNCS PDTDISVHKD ALLAFCESAR IFIHYLSATA  60
NDICKESKRQ TINAEDVLKA IEEIDFTEFV DPLRDSLDAK QIVSQKVVAS NPLFFFRGNH  120
VRRIICHCII LE*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Csi.176361e-160fruit
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024957740.12e-89DNA polymerase epsilon subunit 3 isoform X3
TrEMBLV4SF433e-64V4SF43_9ROSI; Uncharacterized protein
STRINGXP_006424230.15e-65(Citrus clementina)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27470.14e-44nuclear factor Y, subunit B11