PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g033258m
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family NAC
Protein Properties Length: 124aa    MW: 14351.4 Da    PI: 8.6455
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g033258mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM60.45.8e-1929438128
                NAM  38 diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk..kgelvglkktLvfykgrapkgektdWvmheyr 127
                        d+ +++P+d     + + +e+yf++   +k  +g  ++ +tk+gyW+a g d +v+s    +  vg kk  +fy g++p+g+k+ W m eyr
  orange1.1g033258m   2 DLSTFDPNDVVFDERCRANETYFYAWLVNKRGKGMVQRVVTKRGYWEADGVDVPVYSDreMKVMVGFKKNWTFYLGTEPEGQKSAWSMTEYR 93 
                        788999***9855556789*************9999999******************84444559**************************9 PP

                NAM 128 l 128
                        +
  orange1.1g033258m  94 V 94 
                        7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100522.5851123IPR003441NAC domain
SuperFamilySSF1019414.45E-192121IPR003441NAC domain
PfamPF023657.6E-72394IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 124 aa     Download sequence    Send to blast
MDLSTFDPND VVFDERCRAN ETYFYAWLVN KRGKGMVQRV VTKRGYWEAD GVDVPVYSDR  60
EMKVMVGFKK NWTFYLGTEP EGQKSAWSMT EYRVNPRLIP ADQMNDDVKT RIVSYAVCKI  120
TKA*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006437964.12e-88NAC domain-containing protein 45
RefseqXP_006484172.12e-88NAC domain-containing protein 45-like
TrEMBLA0A2H5NWH14e-87A0A2H5NWH1_CITUN; Uncharacterized protein
TrEMBLV4VFG24e-87V4VFG2_9ROSI; Uncharacterized protein
STRINGXP_006484172.17e-88(Citrus sinensis)
STRINGXP_006437964.17e-88(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2298234
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12910.12e-15NAC family protein