PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g033320m
Common NameCISIN_1g033320mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family C3H
Protein Properties Length: 123aa    MW: 13461.1 Da    PI: 8.0425
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g033320mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH30.94.7e-101036127
                       --S---SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
                       +++++C++f+rtG Cky ++Ck++H++
  orange1.1g033320m 10 PGQPECSYFLRTGDCKYKSNCKYHHPK 36
                       5789*********************96 PP
2zf-CCCH361.2e-115781226
                       -S---SGGGGTS--TTTTT-SS-SS CS
            zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHg 26
                       ++  C++++r+G+Ck+G+ Ck+ H+
  orange1.1g033320m 57 GQNVCSYYSRYGICKFGPACKYDHP 81
                       6678********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003561.3E-4936IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.314937IPR000571Zinc finger, CCCH-type
PfamPF006421.6E-71136IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.96E-61338IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.7E-41535IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.1E-75381IPR000571Zinc finger, CCCH-type
SMARTSM003564.0E-65582IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.5585583IPR000571Zinc finger, CCCH-type
PfamPF006423.6E-95781IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.0E-46081IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 123 aa     Download sequence    Send to blast
MLVDEFPERP GQPECSYFLR TGDCKYKSNC KYHHPKNRIP KSPPCTLSDK GLPLRPGQNV  60
CSYYSRYGIC KFGPACKYDH PIHPDASAEY GLDPPPSFGD STTRQETGMA GTGNGNGSDK  120
NI*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006440011.11e-84zinc finger CCCH domain-containing protein 43 isoform X2
SwissprotQ9STM45e-43C3H43_ARATH; Zinc finger CCCH domain-containing protein 43
TrEMBLA0A067FPS84e-85A0A067FPS8_CITSI; Uncharacterized protein
TrEMBLV4SZH54e-85V4SZH5_9ROSI; Uncharacterized protein
STRINGXP_006440009.12e-83(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15633917
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48440.12e-45C3H family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]