PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

orange1.1g033478m

Common Name

CISIN_1g033096mg

Organism

Citrus sinensis

Taxonomic ID

2711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

LSD

Protein Properties

Length: 119aa MW: 13106.4 Da PI: 7.9188

Description

LSD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
orange1.1g033478m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-LSD1	45.6	1.2e-14	35	59	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+Cr lL+YPrGA++V+C++C+tV orange1.1g033478m 35 CGSCRRLLAYPRGARHVKCSCCQTV 59 ************************9 PP
2	zf-LSD1	39.5	9.2e-13	73	97	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C +C +lL+YP+GApsVRC++C +V orange1.1g033478m 73 CASCAVLLMYPYGAPSVRCSSCCFV 97 **********************876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
TIGRFAMs	TIGR01053	2.6E-18	32	62	IPR005735	Zinc finger, LSD1-type
Pfam	PF06943	4.0E-12	35	59	IPR005735	Zinc finger, LSD1-type
TIGRFAMs	TIGR01053	1.8E-9	70	98	IPR005735	Zinc finger, LSD1-type
Pfam	PF06943	9.2E-11	73	97	IPR005735	Zinc finger, LSD1-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009617	Biological Process	response to bacterium

Sequence ? help Back to Top
Protein Sequence Length: 119 aa Download sequence Send to blast
MTTTWWSVAR VNSLSQESFW LTLTCYHQEM AQMVCGSCRR LLAYPRGARH VKCSCCQTVN 60 FVLEAHQVGQ VKCASCAVLL MYPYGAPSVR CSSCCFVTEI GVCGLSLFLC MCDLANQI*

Functional Description ? help Back to Top
Source	Description
UniProt	Putative zinc finger that may be involved in programmed cell death and defense response. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006467804.1	3e-47	protein LOL2
Swissprot	O65426	4e-34	LOL2_ARATH; Protein LOL2
TrEMBL	A0A067G8G9	4e-81	A0A067G8G9_CITSI; Uncharacterized protein
STRING	XP_006467804.1	1e-46	(Citrus sinensis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G21610.1	2e-36	lsd one like 2

Link Out ? help Back to Top
Phytozome	orange1.1g033478m