PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g035517m
Common NameCISIN_1g035517mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family G2-like
Protein Properties Length: 162aa    MW: 18393.5 Da    PI: 6.0247
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g035517mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like102.62.5e-3292145255
            G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                        prlrWtp+LH +Fv+ave+LGG+ekAtPk +l+lm+v gL+++hvkSHLQ+YR+
  orange1.1g035517m  92 PRLRWTPDLHLSFVHAVERLGGQEKATPKLVLQLMNVRGLSIAHVKSHLQMYRS 145
                        8****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.4E-3088146IPR009057Homeodomain-like
PROSITE profilePS5129411.62888148IPR017930Myb domain
SuperFamilySSF466894.48E-1590146IPR009057Homeodomain-like
TIGRFAMsTIGR015571.8E-2392147IPR006447Myb domain, plants
PfamPF002492.2E-993144IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 162 aa     Download sequence    Send to blast
MRTDIEIQCR QEKSDRSEEQ AENTSVVSPQ KWSCFDLNLN EEASCSEEDD VLAKAAEDDD  60
KRTDHLEGST SCSTNNNERR STVRQYVRSK MPRLRWTPDL HLSFVHAVER LGGQEKATPK  120
LVLQLMNVRG LSIAHVKSHL QMYRSKKLDE AGQGEICFSP Q*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A1e-1993147458Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B1e-1993147458Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A1e-1993147357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B1e-1993147357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C1e-1993147357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D1e-1993147357Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A1e-1993147458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C1e-1993147458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D1e-1993147458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F1e-1993147458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H1e-1993147458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J1e-1993147458Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006467640.11e-107uncharacterized protein LOC102609915
RefseqXP_015382428.11e-107uncharacterized protein LOC102609915
SwissprotQ700D91e-30MYBF_ARATH; Putative Myb family transcription factor At1g14600
TrEMBLA0A067GRA61e-117A0A067GRA6_CITSI; Uncharacterized protein
STRINGXP_006467640.11e-106(Citrus sinensis)
STRINGXP_006449512.11e-108(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM36328184
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38300.12e-40G2-like family protein