PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

orange1.1g035657m

Common Name

CISIN_1g035657mg

Organism

Citrus sinensis

Taxonomic ID

2711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

bHLH

Protein Properties

Length: 247aa MW: 26909.4 Da PI: 9.1052

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
orange1.1g035657m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	16.6	1.4e-05	187	226	11	55
HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 R +++ ++++ L++l+ + +K + a++L +A+ YIk Lq orange1.1g035657m 187 VRKEKLGDRIAALQQLVAPF-----GKTDTASVLLEAIGYIKFLQ 226 67789999*******998.....8****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.433	176	225	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.3E-10	186	239	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.67E-6	186	230	No hit	No description
SMART	SM00353	0.008	187	231	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.1E-8	190	230	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 247 aa Download sequence Send to blast
TASYLKNEQK NLNDLGDKLL LKGAMSSGFP INGNHFPAGD LYSSAHNISS VGGAMPSRGN 60 FSQIYPSINI SNLSQTSSTN STNFDMNLQF LDLLASSRVS GDFSQPSHDN LGLYKESLPF 120 GCDQHHLQQS SRRPSCSPSN KIAHFINNSE ITEATKRHGG VMEPKATQFA SKKSRLESRA 180 SCPPMKVRKE KLGDRIAALQ QLVAPFGKTD TASVLLEAIG YIKFLQNQVE VISIPNVLVE 240 IFYVPF*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024040378.1	1e-168	transcription factor bHLH110
Swissprot	Q9SFZ3	1e-59	BH110_ARATH; Transcription factor bHLH110
TrEMBL	A0A067GY71	0.0	A0A067GY71_CITSI; Uncharacterized protein (Fragment)
STRING	XP_006473548.1	1e-156	(Citrus sinensis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM9351	25	33

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G27660.1	2e-47	bHLH family protein

Link Out ? help Back to Top
Phytozome	orange1.1g035657m

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]