PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g035726m
Common NameCISIN_1g035726mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family NAC
Protein Properties Length: 102aa    MW: 11623.1 Da    PI: 9.7264
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g035726mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM81.51.7e-2568154128
                NAM  54 eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                        +++ewyfFs+ +kkya+++r  r+tk g Wk tg d+++ ++ ++e++g+kk Lvf+kg+ +k++kt+Wv+hey+ 
  orange1.1g035726m   6 DDEEWYFFSELQKKYANSDRVDRTTKVGSWKVTGGDRQIWDNcGKEVIGVKKNLVFHKGHGSKAKKTSWVIHEYHS 81 
                        678**************************************988889***************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100528.2931100IPR003441NAC domain
SuperFamilySSF1019413.01E-25586IPR003441NAC domain
PfamPF023653.0E-12880IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 102 aa     Download sequence    Send to blast
QAATPDDEEW YFFSELQKKY ANSDRVDRTT KVGSWKVTGG DRQIWDNCGK EVIGVKKNLV  60
FHKGHGSKAK KTSWVIHEYH SSKASIHQAI SSVLYNLFFF I*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A2e-1578573149NAC domain-containing protein 19
3swm_B2e-1578573149NAC domain-containing protein 19
3swm_C2e-1578573149NAC domain-containing protein 19
3swm_D2e-1578573149NAC domain-containing protein 19
3swp_A2e-1578573149NAC domain-containing protein 19
3swp_B2e-1578573149NAC domain-containing protein 19
3swp_C2e-1578573149NAC domain-containing protein 19
3swp_D2e-1578573149NAC domain-containing protein 19
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024043357.11e-69NAC domain-containing protein 62
TrEMBLA0A067H6V49e-69A0A067H6V4_CITSI; Uncharacterized protein (Fragment)
TrEMBLA0A2H5NY192e-68A0A2H5NY19_CITUN; Uncharacterized protein (Fragment)
STRINGXP_006491409.11e-59(Citrus sinensis)
STRINGXP_006444688.11e-59(Citrus clementina)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04410.16e-24NAC domain containing protein 2