PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g036036m
Common NameCISIN_1g036036mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family NAC
Protein Properties Length: 99aa    MW: 11588.8 Da    PI: 10.0215
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g036036mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM88.61.1e-2768154128
                NAM  54 eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                        +++ewyfFs+++kkya++ r++r+t++g Wk tgkd+++ +k ++e++g+kk Lvfy+gr ++++kt+Wv+hey+ 
  orange1.1g036036m   6 DDDEWYFFSEHNKKYANSARTERTTRAGHWKVTGKDRQIWDKnRKEVIGVKKNLVFYEGRGSNAVKTSWVIHEYHS 81 
                        577*************************************9977788***************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100530.759198IPR003441NAC domain
SuperFamilySSF1019413.92E-27487IPR003441NAC domain
PfamPF023652.3E-13980IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 99 aa     Download sequence    Send to blast
QAAIRDDDEW YFFSEHNKKY ANSARTERTT RAGHWKVTGK DRQIWDKNRK EVIGVKKNLV  60
FYEGRGSNAV KTSWVIHEYH SNNASAYQAF SYFTFVFS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A3e-1897970138Stress-induced transcription factor NAC1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024043356.11e-66NAC domain-containing protein 71-like
TrEMBLA0A067HFK21e-65A0A067HFK2_CITSI; Uncharacterized protein (Fragment)
STRINGXP_006491410.11e-58(Citrus sinensis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28530.18e-25NAC domain containing protein 74