PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g036050m
Common NameCISIN_1g036050mg, LOC102620034
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family GeBP
Protein Properties Length: 394aa    MW: 43468.4 Da    PI: 5.1082
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g036050mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF573125.72e-39163259297
             DUF573   2 lfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkk.aksgkepsfskehdqkifels 92 
                        lfqrlwse+Deiv+L+G+ d+ +k+g +p +d+++fy+++k+s++++vsk qlv+KirrLKkKf+++  k +k+g++ +fsk+h+qk+++ls
  orange1.1g036050m 163 LFQRLWSEDDEIVVLKGMTDYSTKKGLDPNQDMQGFYDYIKNSLHVDVSKAQLVDKIRRLKKKFENNLGKgKKKGEDRTFSKPHEQKAYDLS 254
                        79*******************************************************************98899****************** PP

             DUF573  93 kkiWg 97 
                        kk+Wg
  orange1.1g036050m 255 KKFWG 259
                        ****8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045044.0E-34164259IPR007592Protein of unknown function DUF573
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005730Cellular Componentnucleolus
GO:0005829Cellular Componentcytosol
GO:0009507Cellular Componentchloroplast
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 394 aa     Download sequence    Send to blast
MAPKKPNPME EPPAASSSEE VEEDDDSSGS EEVSSSDGDG EEDAQEPAKT QSPPPQKSHK  60
QSAVKKPEAT PATPQTKSLS SGESESESES ESEPDATPKP IATKPMEETP KVTKPRSKPL  120
SSKRPNETEE SAKDSKRAKK KSPEADPDEE EQKKPGEDTK KQLFQRLWSE DDEIVVLKGM  180
TDYSTKKGLD PNQDMQGFYD YIKNSLHVDV SKAQLVDKIR RLKKKFENNL GKGKKKGEDR  240
TFSKPHEQKA YDLSKKFWGG ESTGGVIESA AKSNGKPKKN QNQKGNSKSL AALKAELTDG  300
AEGDKMEVDN DKGNAVNKTV NLKDKDKVLF DKSLGVAGLE EFVLHDGLDM IEGAKKAELE  360
ERWKELQVAQ LELFLQRNEL IKEQAKLILE AMK*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006467953.10.0probable transcription factor At1g11510
TrEMBLA0A067G7L70.0A0A067G7L7_CITSI; Uncharacterized protein
STRINGXP_006467953.10.0(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM31328181
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61730.12e-26DNA-binding storekeeper protein-related transcriptional regulator