PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

orange1.1g036058m

Common Name

CISIN_1g036058mg

Organism

Citrus sinensis

Taxonomic ID

2711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

M-type_MADS

Protein Properties

Length: 81aa MW: 9288.09 Da PI: 10.7524

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
orange1.1g036058m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	77.1	1.3e-24	9	55	1	47
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkly 47 k+ien + r++tf+kR+ g+ KKA+E+S+LCd+eva+iifs+ gkl orange1.1g036058m 9 KKIENRTYRHITFAKRKSGLVKKAYEISTLCDVEVALIIFSPAGKLI 55 78*******************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	26.562	1	61	IPR002100	Transcription factor, MADS-box
SMART	SM00432	1.0E-29	1	60	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	6.67E-26	2	78	IPR002100	Transcription factor, MADS-box
PROSITE pattern	PS00350	0	3	57	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	6.2E-23	3	23	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	2.5E-23	10	55	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	6.2E-23	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	6.2E-23	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 81 aa Download sequence Send to blast
MGRVRLQIKK IENRTYRHIT FAKRKSGLVK KAYEISTLCD VEVALIIFSP AGKLILFDGK 60 KRLDEILMHF IDLPHHQRAA *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1tqe_P	2e-18	1	79	1	80	Myocyte-specific enhancer factor 2B
1tqe_Q	2e-18	1	79	1	80	Myocyte-specific enhancer factor 2B
1tqe_R	2e-18	1	79	1	80	Myocyte-specific enhancer factor 2B
1tqe_S	2e-18	1	79	1	80	Myocyte-specific enhancer factor 2B
5f28_A	2e-18	1	79	1	80	MEF2C
5f28_B	2e-18	1	79	1	80	MEF2C
5f28_C	2e-18	1	79	1	80	MEF2C
5f28_D	2e-18	1	79	1	80	MEF2C
6c9l_A	2e-18	1	79	1	80	Myocyte-specific enhancer factor 2B
6c9l_B	2e-18	1	79	1	80	Myocyte-specific enhancer factor 2B
6c9l_C	2e-18	1	79	1	80	Myocyte-specific enhancer factor 2B
6c9l_D	2e-18	1	79	1	80	Myocyte-specific enhancer factor 2B
6c9l_E	2e-18	1	79	1	80	Myocyte-specific enhancer factor 2B
6c9l_F	2e-18	1	79	1	80	Myocyte-specific enhancer factor 2B
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Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in pollen. {ECO:0000269\|PubMed:12949148}.

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that forms heterodimers with the MADS-box proteins AGL30 and AGL65 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269\|PubMed:19211705}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012491910.1	2e-39	PREDICTED: MADS-box transcription factor 7-like
Swissprot	Q9LM46	1e-28	AG104_ARATH; Agamous-like MADS-box protein AGL104
TrEMBL	A0A067GUQ0	3e-51	A0A067GUQ0_CITSI; Uncharacterized protein
STRING	Gorai.007G219600.1	6e-39	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM78	28	413

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G22130.1	5e-31	AGAMOUS-like 104

Link Out ? help Back to Top
Phytozome	orange1.1g036058m

Publications ? help Back to Top
Zhang S, et al. FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development. Plant Physiol., 2018. 177(1): p. 285-299 [PMID:29523711]