PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

orange1.1g036604m

Common Name

CISIN_1g036604mg

Organism

Citrus sinensis

Taxonomic ID

2711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

C2H2

Protein Properties

Length: 258aa MW: 27970.2 Da PI: 7.4774

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
orange1.1g036604m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.4	0.00098	83	105	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C+++F++ L H +H orange1.1g036604m 83 YQCKTCNRCFPSFQALGGHRASH 105 9***********99999998887 PP
2	zf-C2H2	14	0.00015	164	186	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg Fs+ L H+r+H orange1.1g036604m 164 HECSICGAEFSSGQALGGHMRRH 186 78********************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	1.07E-8	82	105	No hit	No description
Pfam	PF13912	7.3E-11	82	107	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	9.972	83	110	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.08	83	105	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	85	105	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	1.07E-8	159	186	No hit	No description
Gene3D	G3DSA:3.30.160.60	6.8E-4	162	186	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
Pfam	PF13912	3.9E-13	163	188	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.01	164	186	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	9.743	164	186	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	166	186	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 258 aa Download sequence Send to blast
MVYSCSSSLE SGGEGERIFS TNSPTTSVEF ATTTEQEEDM ANCLILLAQG DAKKISSSSS 60 SHHLDQPATT SKAAAVATGL YVYQCKTCNR CFPSFQALGG HRASHKKPKV INNNIEASKK 120 AFVLMDEEDD RFSNMSTTLS LQMANNRDAA NLCARTNNKA NKVHECSICG AEFSSGQALG 180 GHMRRHRAFT TSTTALTMGT SSSLDRQSQQ AKKPRNILQL DLNLPAPEDD RHESKFAFAS 240 KEQVIIFSAS PLVDCHY*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006428462.2	0.0	zinc finger protein ZAT5
Refseq	XP_006493540.1	0.0	zinc finger protein ZAT5-like
TrEMBL	A0A067DQV6	0.0	A0A067DQV6_CITSI; Uncharacterized protein
STRING	XP_006493540.1	0.0	(Citrus sinensis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6347	27	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G03510.1	5e-56	C2H2 family protein

Link Out ? help Back to Top
Phytozome	orange1.1g036604m