PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

orange1.1g036675m

Common Name

CISIN_1g036675mg, LOC102631091

Organism

Citrus sinensis

Taxonomic ID

2711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

Trihelix

Protein Properties

Length: 340aa MW: 38117.9 Da PI: 9.9739

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
orange1.1g036675m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	49.5	1.1e-15	47	129	1	85
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdql 85 +W++ v +L+ea++ ++ +r+klk+++Weev++++ ++ ++++qCk+k+e+++kry+ + +++ + s++ ++ +l orange1.1g036675m 47 EWSEGAVSCLLEAYETKWVLRNRAKLKGHDWEEVARYVsaraNNTKSPKTQTQCKNKIESMKKRYRSESANADG------SSWLLYPRL 129 5***********************************87766777788999*************9988876......246666665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	3.4E-19	45	130	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 340 aa Download sequence Send to blast
MEKENNTNPL ENVNPSLLLA NNIKEESPRK QIGGGGGGSN DRLKRDEWSE GAVSCLLEAY 60 ETKWVLRNRA KLKGHDWEEV ARYVSARANN TKSPKTQTQC KNKIESMKKR YRSESANADG 120 SSWLLYPRLD LLLRGNNSQQ PQQQQQQQQQ QQQHSQPQPV SFHPPLLLIE PSPAVPQPPP 180 PPGAPPPPPP SQPQNSHGSN GVDHIMAKED GVGTKFSDHP SDKKVMDTDS STPALYSDKE 240 KLRSKKLKTK MERKRRGKGE DWEIAESIRW LAEVVVRSEQ ARMDTMREIE KMRTEAEAKR 300 GELDLKRTEI IANTQLEIAK LFAAANAKGV DSSLRIGRN*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006465753.1	0.0	trihelix transcription factor ASIL1
TrEMBL	A0A067F5T4	0.0	A0A067F5T4_CITSI; Uncharacterized protein
STRING	XP_006465753.1	0.0	(Citrus sinensis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM9859	25	33

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G54390.1	5e-96	sequence-specific DNA binding transcription factors

Link Out ? help Back to Top
Phytozome	orange1.1g036675m
Entrez Gene	102631091