PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

orange1.1g036845m

Common Name

CISIN_1g036845mg

Organism

Citrus sinensis

Taxonomic ID

2711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

LBD

Protein Properties

Length: 193aa MW: 20898.6 Da PI: 8.1282

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
orange1.1g036845m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	141.8	2.2e-44	11	109	1	99
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlka 92 +CaaCk+lrrkC+++C++apyfp e+p+kf nvhk+FGasn++kll++l +++reda++sl+yeAear+rdPvyG+vg i+ lq+q+++l++ orange1.1g036845m 11 PCAACKFLRRKCVPGCIFAPYFPPEEPQKFVNVHKIFGASNMTKLLNDLLPHQREDAVNSLAYEAEARVRDPVYGCVGAISFLQRQVHRLQK 102 7***************************************************************************************** PP DUF260 93 elallke 99 el+++++ orange1.1g036845m 103 ELDSANA 109 99876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	27.673	10	111	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	3.3E-43	11	108	IPR004883	Lateral organ boundaries, LOB

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010199	Biological Process	organ boundary specification between lateral organs and the meristem

Sequence ? help Back to Top
Protein Sequence Length: 193 aa Download sequence Send to blast
MASSSNSYNS PCAACKFLRR KCVPGCIFAP YFPPEEPQKF VNVHKIFGAS NMTKLLNDLL 60 PHQREDAVNS LAYEAEARVR DPVYGCVGAI SFLQRQVHRL QKELDSANAD LIRYACNEIP 120 PGSQLPAPAP LSVSSIHPVI PRQRPIRIGN EGEGFYQPPS SYTHPSYILP WNDNPSPSGD 180 INHGGGGGGG GR*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	3e-67	2	119	2	119	LOB family transfactor Ramosa2.1
5ly0_B	3e-67	2	119	2	119	LOB family transfactor Ramosa2.1
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Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Csi.6870	0.0	vegetative meristem

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in a band of cells at the adaxial base of all lateral organs formed from the shoot apical meristem and at the base of lateral roots. {ECO:0000269\|PubMed:12068116}.

Functional Description ? help Back to Top
Source	Description
UniProt	Not known; ectopic expression of LOB leads to alterations in the size and shape of leaves and floral organs and causes male and female sterility.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00581	DAP	Transfer from AT5G63090	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Positively regulated within the shoot apex by both ASYMMETRIC LEAVES 1 (AS1) and ASYMMETRIC LEAVES 2 (AS2/LBD6) and by KNAT1. {ECO:0000269\|PubMed:11934861}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006476856.1	1e-139	protein LATERAL ORGAN BOUNDARIES
Refseq	XP_006476857.1	1e-139	protein LATERAL ORGAN BOUNDARIES
Refseq	XP_006476858.1	1e-139	protein LATERAL ORGAN BOUNDARIES
Refseq	XP_015385245.1	1e-139	protein LATERAL ORGAN BOUNDARIES
Refseq	XP_024953801.1	1e-139	protein LATERAL ORGAN BOUNDARIES
Refseq	XP_024953802.1	1e-139	protein LATERAL ORGAN BOUNDARIES
Swissprot	Q9FML4	5e-74	LOB_ARATH; Protein LATERAL ORGAN BOUNDARIES
TrEMBL	A0A067G1Z5	1e-139	A0A067G1Z5_CITSI; Uncharacterized protein
STRING	XP_006476856.1	1e-138	(Citrus sinensis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM131	28	340

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G63090.4	1e-76	LBD family protein

Link Out ? help Back to Top
Phytozome	orange1.1g036845m

Publications ? help Back to Top
Xu C, et al. Control of auxin-induced callus formation by bZIP59-LBD complex in Arabidopsis regeneration. Nat Plants, 2018. 4(2): p. 108-115 [PMID:29358751] Liu J, et al. The WOX11-LBD16 Pathway Promotes Pluripotency Acquisition in Callus Cells During De Novo Shoot Regeneration in Tissue Culture. Plant Cell Physiol., 2018. 59(4): p. 734-743 [PMID:29361138]