PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

orange1.1g036915m

Common Name

CISIN_1g036915mg

Organism

Citrus sinensis

Taxonomic ID

2711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

Protein Properties

Length: 308aa MW: 35575.5 Da PI: 10.0653

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
orange1.1g036915m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	50.7	3.3e-16	171	260	1	98
EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 f+k +++s+v+ +l lp +f++eh +++ +tl de+ +++ k+ +k++ l++GW++F +++L +gD +vF+l++ +f orange1.1g036915m 171 FVKPMLQSHVTGGFWLGLPVHFCKEHlP---HSDEIITLVDEEENEFPTKYLAEKTG----LSGGWRGFSIDHELVDGDCLVFQLIKPATF- 254 89**********************42...34557***********555555....*********************9986555. PP .EEEEE- CS B3 92 lvvkvfr 98 +v ++r orange1.1g036915m 255 -KVYIIR 260 .887776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	1.4E-20	164	260	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	1.06E-24	164	260	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	1.07E-25	169	260	No hit	No description
PROSITE profile	PS50863	11.138	171	262	IPR003340	B3 DNA binding domain
Pfam	PF02362	2.6E-14	171	260	IPR003340	B3 DNA binding domain
SMART	SM01019	6.6E-21	171	262	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0016021	Cellular Component	integral component of membrane
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 308 aa Download sequence Send to blast
FPRRALGNAT VVISLHFFPF FFFFNFGSLE ITTPKDKRKT LKMVESKLTY EECRRQRMEE 60 NKKRMEELKL NVLARSLKTP VSKPSPVKKR VSKPKPASAP VRRSSRVADK PPPNYNEDPF 120 EPFLTRRRLT CRSYQRRNLL NRVYASDEER ASAIDRADEV QSGLDSQYPS FVKPMLQSHV 180 TGGFWLGLPV HFCKEHLPHS DEIITLVDEE ENEFPTKYLA EKTGLSGGWR GFSIDHELVD 240 GDCLVFQLIK PATFKVYIIR VYVSEFNDDN NDVNKKNEKN NMENKEDSSA RITRSAKRTR 300 SSNLFKS*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006423041.1	0.0	B3 domain-containing protein At3g19184 isoform X1
Swissprot	Q1G3M3	1e-86	Y3918_ARATH; B3 domain-containing protein At3g19184
TrEMBL	A0A067DTV8	0.0	A0A067DTV8_CITSI; Uncharacterized protein (Fragment)
STRING	XP_006423041.1	0.0	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3744	27	59

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19184.1	6e-79	B3 family protein

Link Out ? help Back to Top
Phytozome	orange1.1g036915m

Publications ? help Back to Top
Mantegazza O, et al. Analysis of the arabidopsis REM gene family predicts functions during flower development. Ann. Bot., 2014. 114(7): p. 1507-15 [PMID:25002525]